PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030841m
Common NameCICLE_v10030816mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 712aa    MW: 77502.9 Da    PI: 6.8427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030841mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07288308526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  Ciclev10030841m 288 PCPDFRK-GACRRGDMCEYAHG 308
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.42E-184150IPR020683Ankyrin repeat-containing domain
CDDcd002046.83E-177150No hitNo description
Gene3DG3DSA:1.25.40.205.0E-219194IPR020683Ankyrin repeat-containing domain
SMARTSM002486901141IPR002110Ankyrin repeat
PfamPF127963.1E-950126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029720.92558151IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00145888IPR002110Ankyrin repeat
PROSITE profilePS500889.195891IPR002110Ankyrin repeat
SMARTSM002485.1E-493125IPR002110Ankyrin repeat
PROSITE profilePS5008811.80893128IPR002110Ankyrin repeat
SMARTSM003564.0E-6283309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4288310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582288310IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5288308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4316346IPR000571Zinc finger, CCCH-type
SMARTSM0035667318341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MNNNSTAETE DSFTSMLELA SNNDVEGFKR MLERDPSSVD EVGLWYGRVN GSKQMVSEHR  60
TPLMVAATYG SVDVLKLILL HSSADVNVSC GSDRTTALHC AASGGSANVV DVVRLLLSAG  120
ADPDCADANG HRPIDVSVLP PKLDSMRAIL EDLFGSKNSS VVVVASGAEH NLTVSIGSSN  180
SDYSSPLLTA SASGSPPSPC RLVSSPMALK FNDVSFGAGA EKKEYPIDPS LPDIKNSIYA  240
TDEFRMFSFK IRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG  300
DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC DRRVCFFAHT AEELRPLYVS NGSVVPSPRS  360
SVSGASVMDM AAALLLPGSP SSMSGMSPNP FSQPMSPSGN CNLQSSMMWP QPNVPTLNLP  420
GSNIQSSRLR SSLSARDILP DNFSSLSDFD SQQHILNDLT CFSQTRNNSV SLSRSCRPKT  480
LTPSNLDELF SAEISSSPRF SDQAVFSPTH KSSVLNQFQQ PQSMLSPIKT NVFSPKNVEH  540
PLLQASFRVG SPGRMSPRSV EPISPMGPRL AAFGQREKQQ QQLRSLSSRD PISNNPIPNI  600
GSPRNVNSSW SKWGSPSGKL DWSIKGDELE LLRRSSSCDL RNNNHGEPDL SWIHSIVKES  660
PPEMMKEKTA NPVVTTASSG EALNSNSQAD SFDHSVIGAW LEQMQLDQLV V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hb5_A2e-11161378143Engineered Protein
4hb5_B2e-11161378143Engineered Protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439117.10.0zinc finger CCCH domain-containing protein 30 isoform X2
RefseqXP_006439118.10.0zinc finger CCCH domain-containing protein 30 isoform X1
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLV4SWR50.0V4SWR5_9ROSI; Uncharacterized protein
TrEMBLV4TG830.0V4TG83_9ROSI; Uncharacterized protein
STRINGXP_006439118.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]