PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030816m
Common NameCICLE_v10030816mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 726aa    MW: 79000.5 Da    PI: 6.549
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030816mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07302322526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  Ciclev10030816m 302 PCPDFRK-GACRRGDMCEYAHG 322
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.95E-1816209IPR020683Ankyrin repeat-containing domain
CDDcd002047.08E-1721164No hitNo description
Gene3DG3DSA:1.25.40.205.2E-2123208IPR020683Ankyrin repeat-containing domain
SMARTSM002486902555IPR002110Ankyrin repeat
PfamPF127963.3E-964140IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001472102IPR002110Ankyrin repeat
PROSITE profilePS500889.1972105IPR002110Ankyrin repeat
PROSITE profilePS5029720.92572165IPR020683Ankyrin repeat-containing domain
SMARTSM002485.1E-4107139IPR002110Ankyrin repeat
PROSITE profilePS5008811.808107142IPR002110Ankyrin repeat
SMARTSM003564.0E-6297323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4302324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582302324IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-5302322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4330360IPR000571Zinc finger, CCCH-type
SMARTSM0035667332355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MCCGPDKSES NTEDMNNNST AETEDSFTSM LELASNNDVE GFKRMLERDP SSVDEVGLWY  60
GRVNGSKQMV SEHRTPLMVA ATYGSVDVLK LILLHSSADV NVSCGSDRTT ALHCAASGGS  120
ANVVDVVRLL LSAGADPDCA DANGHRPIDV SVLPPKLDSM RAILEDLFGS KNSSVVVVAS  180
GAEHNLTVSI GSSNSDYSSP LLTASASGSP PSPCRLVSSP MALKFNDVSF GAGAEKKEYP  240
IDPSLPDIKN SIYATDEFRM FSFKIRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCDRRVCF FAHTAEELRP  360
LYVSNGSVVP SPRSSVSGAS VMDMAAALLL PGSPSSMSGM SPNPFSQPMS PSGNCNLQSS  420
MMWPQPNVPT LNLPGSNIQS SRLRSSLSAR DILPDNFSSL SDFDSQQHIL NDLTCFSQTR  480
NNSVSLSRSC RPKTLTPSNL DELFSAEISS SPRFSDQAVF SPTHKSSVLN QFQQPQSMLS  540
PIKTNVFSPK NVEHPLLQAS FRVGSPGRMS PRSVEPISPM GPRLAAFGQR EKQQQQLRSL  600
SSRDPISNNP IPNIGSPRNV NSSWSKWGSP SGKLDWSIKG DELELLRRSS SCDLRNNNHG  660
EPDLSWIHSI VKESPPEMMK EKTANPVVTT ASSGEALNSN SQADSFDHSV IGAWLEQMQL  720
DQLVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hb5_A3e-11301518143Engineered Protein
4hb5_B3e-11301518143Engineered Protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439118.10.0zinc finger CCCH domain-containing protein 30 isoform X1
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLV4SWR50.0V4SWR5_9ROSI; Uncharacterized protein
STRINGXP_006439118.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]