PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030365m | ||||||||
Common Name | CICLE_v10030365mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 230aa MW: 26754.3 Da PI: 6.7774 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.6 | 8e-07 | 120 | 136 | 6 | 22 |
-SGGGGTS--TTTTT-S CS zf-CCCH 6 CrffartGtCkyGdrCk 22 C+f+++tG C++G rC+ Ciclev10030365m 120 CPFHLKTGACWFGQRCS 136 ****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR01848 | 6.9E-9 | 120 | 139 | IPR009145 | U2 auxiliary factor small subunit |
Pfam | PF00642 | 8.1E-5 | 120 | 137 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 6.9E-9 | 139 | 159 | IPR009145 | U2 auxiliary factor small subunit |
SuperFamily | SSF54928 | 1.05E-7 | 174 | 209 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 5.6E-8 | 177 | 208 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEDNECRDGG KKLRRVLGAS RIWRRKENEC DEDDDWEYVE EGPTEIIWQG NEIIIRMKKV 60 RVLKKDANPL SKKEDVDRPT SNPLPPQSEA FADHQNAQQE LETIAQQVPN FGTEQDKVHC 120 PFHLKTGACW FGQRCSRVYF YPDKSCTLLI KNMHNGPGLA WEQDEGLEKW FFPLERGNIY 180 VHYKSLESAV LAYHSINGRY FAGKQVFVKN YWSLLSTLYL FVLYKVTTI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024046556.1 | 1e-113 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 5-like | ||||
Swissprot | Q9SY74 | 3e-78 | C3H5_ARATH; Zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | V4SDX8 | 1e-172 | V4SDX8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006423800.1 | 1e-173 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5975 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 1e-80 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030365m |
Entrez Gene | 18035177 |
Publications ? help Back to Top | |||
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