PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030309m
Common NameCICLE_v10030309mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 386aa    MW: 42060.1 Da    PI: 4.3585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030309mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-103073471055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Ciclev10030309m 307 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 347
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-14297362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.224297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-12302356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.30E-12306351No hitNo description
PfamPF000101.2E-7307347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MHPNRSSKYV LEGAIAEGEW SSLSGMCTTD QEADFMAQLL GNCPVSAELE GSSSFGNSSS  60
PTFWPSHGAN DYGSYYSLDI GAYSGGGGSS IFYPYSSSQE SIYLSDSHQI LGNNNINDNN  120
INSSISMDFC MGDANCNTSS YLIDNQGEDE CLNNQENNNI SDGNKPELGF PIKALDTKNE  180
SEMQATEPAV EEKLNNPSEC SKKRSRNATD VSPLFKIHSY IFAWLLSISN TEEDNDANNN  240
ENENNKSIIG ANRPQLSSSC CSEDESNASQ DQIGGEDSSK GKVALNLSGK TRASRGSATD  300
PQSLYARKRR ERINERLRIL QNLVPNGTKV DISTMLEEAV QYVKFLQLQI KLLSSDDLWM  360
YAPIAYNGMN IGLDHLKLAA ASKLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024034827.10.0transcription factor bHLH84
TrEMBLV4RNW20.0V4RNW2_9ROSI; Uncharacterized protein
STRINGXP_006422828.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.19e-51ROOT HAIR DEFECTIVE 6-LIKE 2