PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10030284m
Common NameCICLE_v100302841mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 666aa    MW: 76429 Da    PI: 6.9486
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10030284mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-08459499346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE el  + ++++G++ Wk  a  +g  + + ++k+ w+ 
  Ciclev10030284m 459 KWTPEELELVRKFHEKHGSN-WKMLADALG--KHRFHVKDAWRR 499
                      8*****************99.********9..667778887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0048383454IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-5386473IPR009057Homeodomain-like
SMARTSM007170.041456503IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-9457518IPR009057Homeodomain-like
CDDcd001670.00423459488No hitNo description
PROSITE profilePS500906.62459501IPR017877Myb-like domain
PfamPF139212.0E-11460518No hitNo description
Gene3DG3DSA:1.10.10.605.6E-10474511IPR009057Homeodomain-like
PROSITE profilePS500908.014502570IPR017877Myb-like domain
SMARTSM007172.8506572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-7512571IPR009057Homeodomain-like
PROSITE profilePS500907.05572625IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MGEQASVLSH DCARILQRGS GLFYAATLLT VCFLSLGRHS LHQPFICRRS YVRLSVNPTP  60
LVRRKQRFAL VVCVIVEVFE ERPCVMGKKT LGKKGHEREN GIVTEGEVDF KEEEKKRDVD  120
LRASENEVEM KDDVDENERK INEVGGNDFE FGDSRNGVIV EGHVDTNNTG SEKERQKKKR  180
KLEISEDENQ IPKDMRINND EEVSEINEDS KQKQLAMDEN ASLQKNDQED SGNNSELKVR  240
KKRKKLLKEW MNNDGSGIVS SLGDNAEGNN KETREAIRER EQLDGRVMEK AEKLCNVNSG  300
VEDMEGHAIL EEDGKKEKKK AKSVKKHSGG DKKASQTKKG VEPNDLSEGS AQKERSKKVS  360
FSNDVQVFPS SDVKNGKDDG FVRGKRFSKE EDEMIKRAVM NYIETHGLGE EGLNMVLHCR  420
SHPEVKHCWK EIGSALPWRP YDSIYYRAHI IFQRDENRKW TPEELELVRK FHEKHGSNWK  480
MLADALGKHR FHVKDAWRRV RLPNQKKGQW SQEEYQKLFD LVNMDLRMRA LEEKKTKHGM  540
LRDNISWEAI SDKLATRSNA ICCMKWYDQL TSPMVAEGKW ADTDDFHLAN ALSSLDACCM  600
DDVDWDNLLE HRSGTLCQKR WNQMVKHLGT DGNKSFPEQV EILSTRYSPD VLEAREAYNS  660
KPAVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181KKKRKL
2240244KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024034206.10.0RNA polymerase I termination factor
TrEMBLV4UEM10.0V4UEM1_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006424519.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-135MYB_related family protein