PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10030003m | ||||||||
Common Name | CICLE_v10030003mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GeBP | ||||||||
Protein Properties | Length: 197aa MW: 22702.2 Da PI: 6.5613 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 76 | 6.7e-24 | 27 | 116 | 5 | 97 |
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf..kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 ++w+ee ei +L Gli+f +k+g +p ++ ++f++++++s+ + +++ sql +K+++L+kKfk++ +k + +s++h++ felskkiW Ciclev10030003m 27 QVWTEEQEICILNGLIKFSTKKGIDPLKHKKRFFSYIRGSLAVeeEFTLSQLNDKLKSLQKKFKNNLNK-----GKGISTPHENRLFELSKKIW 115 79*************************************98652279**********************.....556999************** PP DUF573 97 g 97 g Ciclev10030003m 116 G 116 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.6E-22 | 27 | 116 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MDLENLIVAD SEDQDGQKVD KRSVQPQVWT EEQEICILNG LIKFSTKKGI DPLKHKKRFF 60 SYIRGSLAVE EEFTLSQLND KLKSLQKKFK NNLNKGKGIS TPHENRLFEL SKKIWGDDIK 120 CVPATTEANI EKFGELGENK IEQVLEQLGE AKRIEFKKEW DELQILELKL TVKRAELVQF 180 QSEIMLDAMM KKFATN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423929.1 | 1e-140 | transcription factor STKL2 | ||||
Refseq | XP_015386435.1 | 1e-140 | transcription factor STKL2-like | ||||
TrEMBL | V4UD06 | 1e-138 | V4UD06_9ROSI; Uncharacterized protein | ||||
STRING | XP_006423929.1 | 1e-139 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22824 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66420.1 | 9e-08 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10030003m |
Entrez Gene | 18034053 |