PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10029984m
Common NameCICLE_v10029984mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 383aa    MW: 42318.8 Da    PI: 8.481
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10029984mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.2e-07218240123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cgk F+r  nL+ H+r H
  Ciclev10029984m 218 HYCQVCGKGFKRDANLRMHMRAH 240
                      68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.39E-6216244No hitNo description
Gene3DG3DSA:3.30.160.601.0E-6218244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034218240IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653218245IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
SMARTSM00355150275308IPR015880Zinc finger, C2H2-like
SMARTSM0035522313335IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MIPGGATSCF PNMSQASVKA YPVPEDNIVS SSLQTSSSPG PASNPTNSSL LYSVFFLKEK  60
IHQLQSVVTV LVSQGQATES TSIAMANMGS LIQEIIITAS SLMVTCQQMS TLPAASISGN  120
NNITANEIFQ QQQHVGPNNQ ERSSGQQGYY FTEAFDTCYG DNNDYVTTHD HNRGMHNNVI  180
NSNDNTNITV AENRESFSEI DCDIIELVAG DLLAKYTHYC QVCGKGFKRD ANLRMHMRAH  240
GDEYKTTAAL TNPLKKNGSS MGNNNESAIK IARKYSCPQE GCRWNKKHAK FQPLKSMICA  300
KNHYKRSHCP KMYVCKRCNR KQFSVLSDLR THEKHCGDLK WQCSCGTTFS RKDKLMGHVA  360
LFVGHTPAVN GQQLAPMQLH DR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024035450.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLV4SB260.0V4SB26_9ROSI; Uncharacterized protein
STRINGXP_006424437.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-101C2H2 family protein