PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10029354m

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

YABBY

Protein Properties

Length: 187aa MW: 20802.7 Da PI: 8.5774

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10029354m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	232.5	9.9e-72	2	159	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +++ +se+vCyv+Cn+CntilavsvP +slf++vtvrCGhC++ll vn+ a q+++ ++ +l++++ + e+++++ ++++ ++ Ciclev10029354m 2 SLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDP-------QLQKQHINLEDSITKDCGSSSKCNKF 88 567799*****************************************999999999985.......33333323333333333222222223 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++ e ++e+pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Ciclev10029354m 89 SSAF---EIAEHETPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 159 3332...446778999999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-73	6	159	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-8	103	153	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.7E-5	107	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MSLDLASERV CYVHCNYCNT ILAVSVPCSS LFNIVTVRCG HCANLLNVNM VSALQAVPLQ 60 DPQLQKQHIN LEDSITKDCG SSSKCNKFSS AFEIAEHETP RMPPIRPPEK RQRVPSAYNR 120 FIKEEIQRIK ASNPDISHRE AFSTAAKNWA HFPHIHFGLK LDGNKQAKLD KAAAYAEGTQ 180 KSNGFY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ccl.19655	1e-154	vegetative tissue

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006424060.2	1e-139	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	4e-81	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A067E4Z3	1e-137	A0A067E4Z3_CITSI; Uncharacterized protein
TrEMBL	A0A2H5Q3N3	1e-137	A0A2H5Q3N3_CITUN; Uncharacterized protein
STRING	XP_006487832.1	1e-137	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-83	YABBY family protein

Link Out ? help Back to Top
Phytozome	Ciclev10029354m

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]