PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028843m
Common NameCICLE_v10028843mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 322aa    MW: 36519.3 Da    PI: 5.6833
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028843mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.7e-18897198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     ffkv       +s+rl +p  f+++ +  + ++ +++l +  g+ W v +    +++++++ +GW++Fvk+n L++ D++v+k+dg+  f  +vk+
  Ciclev10028843m  8 FFKVY--LPEKSSNRLHIPDAFIAHLS--PSKPEKVMLINHIGEYWHVDV--AYCDKGVFFLDGWQKFVKDNSLETADILVLKYDGDCWF--NVKI 95
                     77777..66778899********5555..456778***************..77777888889***********************9999..7777 PP

                     E- CS
               B3 97 fr 98
                       
  Ciclev10028843m 96 MG 97
                     65 PP
2B334.83e-112223051297
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97 
                      +++ l +p + +++ g+k    k++t+ de+g s+  +l ++k +++    kGW+ F++a++Lk  D+++ +++ +r ++ + +v+++
  Ciclev10028843m 222 RKNYLHVPSHVLKDLGLK--LAKKITILDERGYSFHGQLDIWKDGRQG--IKGWSAFCRAKKLKKDDICICEFThSRkMQNTIKVHIV 305
                      567899999999999999..7779***************888888773..37****************99775533348888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.82E-225100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-22699IPR015300DNA-binding pseudobarrel domain
CDDcd100172.70E-15695No hitNo description
PROSITE profilePS5086312.59699IPR003340B3 DNA binding domain
PfamPF023623.5E-15896IPR003340B3 DNA binding domain
SMARTSM010191.8E-14899IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-15209304IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-14210304IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.022211308IPR003340B3 DNA binding domain
SMARTSM010190.0093213308IPR003340B3 DNA binding domain
PfamPF023622.5E-9222305IPR003340B3 DNA binding domain
CDDcd100172.81E-8222304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAKCIPGFFK VYLPEKSSNR LHIPDAFIAH LSPSKPEKVM LINHIGEYWH VDVAYCDKGV  60
FFLDGWQKFV KDNSLETADI LVLKYDGDCW FNVKIMGKSG IEKTESYKED LWVEDEEEET  120
EEEEKGGEEA EEDCKDDCVF EFGDNDSAAD KDYIEEEDDD DEMTAITSCR GRINIGKSKK  180
RAVAKAGGSK AVYDINLLEV DVGDYGLYPN PYFVSKAWAG TRKNYLHVPS HVLKDLGLKL  240
AKKITILDER GYSFHGQLDI WKDGRQGIKG WSAFCRAKKL KKDDICICEF THSRKMQNTI  300
KVHIVQGVGS QSKAKRSRSK N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423126.10.0B3 domain-containing protein At5g57720
RefseqXP_006479376.10.0B3 domain-containing protein At5g57720-like
TrEMBLV4SH700.0V4SH70_9ROSI; Uncharacterized protein
STRINGXP_006479376.10.0(Citrus sinensis)
STRINGXP_006423126.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-19B3 family protein