PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028715m
Common NameCICLE_v10028715mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 360aa    MW: 40539.9 Da    PI: 10.2801
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028715mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.4e-31291348359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Ciclev10028715m 291 DEYTWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCPEEPSMLIVTYEGEHNHS 348
                      9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.5E-17241287IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-33277349IPR003657WRKY domain
PROSITE profilePS5081129.826284350IPR003657WRKY domain
SuperFamilySSF1182908.37E-27287348IPR003657WRKY domain
SMARTSM007741.8E-37289349IPR003657WRKY domain
PfamPF031066.6E-27291347IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEEVEEANKI AVESCYRVLN LLSQHNKDPL QVHHQYRNLA LETDEVVFKF KRVVSLLSHG  60
TTRVRKLRKN YLKPTTPSNL PQNIFLDSPN TNLSKPVLSP KPLQVIPPHD FFETTPSSSS  120
IRREKLSTFN NNNNNNNNNR SPALQMATPS QSLQQFLYQQ QIQRLQFQQQ HMGMMMYSSG  180
GNNGGINLKF DGSTSCCTPS NMTMSSTKSL ISSLSLDGGS NNSFHLIGVP QHSSQISQHS  240
KKRCFSSRAE DGTLKCSTSG KCHCSKRRKH RVKRSIKVPA ISNKVADIPP DEYTWRKYGQ  300
KPIKGSPHPR GYYKCSSVRG CPARKHVERC PEEPSMLIVT YEGEHNHSRI MQSSQSAHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-192873471271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424003.10.0probable WRKY transcription factor 74
SwissprotQ93WU61e-108WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLV4RRT70.0V4RRT7_9ROSI; Uncharacterized protein
STRINGXP_006424003.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.16e-94WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]