PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028631m
Common NameCICLE_v10028631mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 389aa    MW: 43018.1 Da    PI: 8.7825
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028631mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001147170123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+ Cg+ F  +++L++H++  H
  Ciclev10028631m 147 FPCTACGEIFQKPHLLEQHQSIkH 170
                      89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.702147175IPR007087Zinc finger, C2H2
PROSITE patternPS000280149170IPR007087Zinc finger, C2H2
SuperFamilySSF563992.69E-16172387No hitNo description
Gene3DG3DSA:3.90.228.102.5E-6319387IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAKTTVSIGS FFYKFLSLFL LLLHLGCFIF PSNNNPSPTR KKRKASPLSP SPYSPSRLKT  60
KPHKALSSSW SYLKRIFSNS KTLKPSLSQT SSTSSTSNII SSARSSQHSL VPPDHQIHLS  120
DIPPSVLESD ISAADHNPFF PLRNDIFPCT ACGEIFQKPH LLEQHQSIKH AVSELIDGDS  180
GKNIVNIIFK TGWSNKERNP EIHRILKIHN SSKILSRFEE YRELVKTKAA RNGAVRKRDE  240
RCIADGNELL RFYCSTFVCD LGQSGNSSIC NQTYCSVCGI IKSGFSPKLD GISTLSSSWR  300
AHVAIPEEIE EEFKFMNLKR AMLVCRVVAG RVGCDADDDV DMAKENGGFD SVVGRGAGGV  360
NSRVDDDEEL LVFNPRAVLP CFVIVYTV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425041.10.0uncharacterized protein LOC18034369
TrEMBLA0A2H5NCG30.0A0A2H5NCG3_CITUN; Uncharacterized protein
TrEMBLV4SMJ50.0V4SMJ5_9ROSI; Uncharacterized protein
STRINGXP_006425041.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-107C2H2 family protein