PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028618m
Common NameCICLE_v10028618mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 392aa    MW: 44011.8 Da    PI: 8.6061
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028618mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1578e-49171431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      + pGfrF+Ptd el+++yLkkk+eg++  + evi+e++i+++ePwdLp k+v ++++ew+fF+ r +ky++g++++rat+ gyWkatgk+++v+
  Ciclev10028618m  17 MFPGFRFSPTDVELISFYLKKKMEGSEKCV-EVISEIEICRYEPWDLPaKSVIQSDNEWFFFCARGRKYPNGSQSRRATELGYWKATGKERNVK 109
                      579************************777.99***************667777899************************************* PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      s +++++g+k+tLvf+ grapkge+t+W+mhey +
  Ciclev10028618m 110 S-GSNVIGTKRTLVFHIGRAPKGERTEWIMHEYCM 143
                      *.99*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-547158IPR003441NAC domain
PROSITE profilePS5100551.73517159IPR003441NAC domain
PfamPF023651.6E-2419142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MAGVSRETQM SIEASSMFPG FRFSPTDVEL ISFYLKKKME GSEKCVEVIS EIEICRYEPW  60
DLPAKSVIQS DNEWFFFCAR GRKYPNGSQS RRATELGYWK ATGKERNVKS GSNVIGTKRT  120
LVFHIGRAPK GERTEWIMHE YCMQGGSQDS LVVCRLRKNS EFRLNKTSTR ASQHRRVHNS  180
NCAVSEGGTD QTGMSEGDKA VECSSKKCSS SHDSYSIEQT DSASEAEEKL LDDVNPTESS  240
SHQKDCPGEE DFYADILKDD IINLDSLSAM LPLPPALASQ QETGRNSQQQ GETFSFQAGP  300
FQGTASRRIK LRKQKLGLCR FRELSSEKSK RQESKRPECL LSKFVGMTVH HRLVSVGFGL  360
LTLLALFIFL LGGFWPIKNL TRAALNKNLW H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4031562165Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424149.10.0NAC domain-containing protein 89
TrEMBLV4UDK90.0V4UDK9_9ROSI; Uncharacterized protein
STRINGXP_006424149.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.15e-98NAC domain containing protein 89