PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028601m
Common NameCICLE_v10028601mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 397aa    MW: 44628.1 Da    PI: 7.7298
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028601mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.11e-13341390147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +++W+ eE++ l ++v+q+G+g+Wk+I +  +     Rt+ ++k++w++ 
  Ciclev10028601m 341 KKKWSLEEEDALRKGVEQFGKGNWKLILKSNPgafDERTEVDLKDKWRNM 390
                      689********************************99***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5336395IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-15337392IPR009057Homeodomain-like
SuperFamilySSF466898.22E-16338392IPR009057Homeodomain-like
SMARTSM007174.8E-10340393IPR001005SANT/Myb domain
PfamPF002493.1E-11341390IPR001005SANT/Myb domain
CDDcd116601.45E-18344392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDEDISRWVI EFLLRNSPSD QLINRILAII PISNNNNFRL KKTLLLRSIQ SQLSSDGDAS  60
LSKTILENLK AVRDLDEKEG IAITRSMEAA IRDAAENTQN DDALRQVVKT YLEEAWASMG  120
PTFLELAAAG GRGRAHVETE DKEKGKGIRK ENVQPKRKHV ASHRRARGPV RIIDSEDLSS  180
DEPCSQYDTL PTPEVNKVQE ALKSSSLELQ AIVTDPLPDA LRQAEAVVSG MARANQIPEP  240
SVGRETNVDK PVLNPSVDAH LEPLQANQGN RKDESCSHQS NVPKSSLMER NSTAHAYEWD  300
DSIDEEPSNQ GNRFHLPSPK RKAVSPLKNH DVTKLARRRK KKKWSLEEED ALRKGVEQFG  360
KGNWKLILKS NPGAFDERTE VDLKDKWRNM TRYSFY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319341KRKAVSPLKNHDVTKLARRRKKK
2336342RRRKKKK
3337342RRKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422498.10.0uncharacterized protein LOC18035267
TrEMBLA0A067FXT20.0A0A067FXT2_CITSI; Uncharacterized protein
TrEMBLV4RN490.0V4RN49_9ROSI; Uncharacterized protein
STRINGXP_006422498.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1478467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-17MYB_related family protein