PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10028455m
Common NameCICLE_v10028399mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 445aa    MW: 50851.7 Da    PI: 6.798
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10028455mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-1680167196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f k++++s+v+   +l lp +f++ ++   + ++  ++e+esg+++++++     s+r+ l++GWk F +an+L egD++vF+l++ ++f  + 
  Ciclev10028455m  80 FWKAMVKSNVSHGFWLHLPMRFCKFNMP--KIDTVFIVENESGEEYKINY----ISQRTALSGGWKAFSDANQLYEGDVLVFHLVEPTRF--KA 165
                      6799*******************88863..477899**************....566778***********************9876666..44 PP

                      EE CS
               B3  95 kv 96 
                       +
  Ciclev10028455m 166 YI 167
                      44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1874171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-2275172IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-2178169No hitNo description
SMARTSM010192.1E-1980171IPR003340B3 DNA binding domain
PfamPF023621.2E-1480167IPR003340B3 DNA binding domain
PROSITE profilePS5086312.98580171IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEEQSEPETP LLQTTKIKRK KTAESKMKLT QGAFDSSKES KSRRKRAMID DLYDHAKVNS  60
PVIERAEEVR ANLAPSYPSF WKAMVKSNVS HGFWLHLPMR FCKFNMPKID TVFIVENESG  120
EEYKINYISQ RTALSGGWKA FSDANQLYEG DVLVFHLVEP TRFKAYIVRA NGFGNVNADA  180
KPLNSVPMDD ELEVAPKDHS EKRVKKNKRA KRVKPPPGFH RDNNQSNSLM LLETNNGHVE  240
DQFNNDTEDL GPNKVLPHSE SSNFKEMKSI DDFTILVDGL AIDCELSDQH RNKYYDLCCS  300
QNSFLHDHLL KSINCKLAAE IITQTVNIAE AIRACNLSTS RADYEIWDKT LKGFELLGMN  360
VGFLRARLNR LMSLAFESEE SEVSKRLREV SAEQARAEEE MRSLELKLLR LKETMGRLDS  420
EVESLKVKAE KHELKFQEEA NAPW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.200800.0abscission zone| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423043.10.0B3 domain-containing protein Os01g0234100 isoform X3
TrEMBLV4RPG70.0V4RPG7_9ROSI; Uncharacterized protein
STRINGXP_006423044.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-33B3 family protein