PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027968m
Common NameCICLE_v10027927mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 660aa    MW: 72557.3 Da    PI: 8.913
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027968mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07560609147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Ciclev10027968m 560 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 609
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542368.18E-7363437IPR029071Ubiquitin-related domain
PROSITE profilePS500539.09369437IPR000626Ubiquitin domain
PROSITE profilePS5129414.733555614IPR017930Myb domain
SMARTSM007172.0E-7559612IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-10560610IPR009057Homeodomain-like
SuperFamilySSF466891.71E-15561642IPR009057Homeodomain-like
CDDcd116601.78E-17561611No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MCAFDLLATV AGKLLLEKQC TPSSSNTPSD EDQSAVAKEI EQKAMQDENK QLKVETCDQG  60
SCDRGFFVSD LVSQAHDQKC SLKPPSCQQA DAHPGFASVI TTSDCSEGFG DQKLVNGKPK  120
NEMGTLASKV EVGPSGYMGY GNCKVEAETN KFMKDESHKT AKVQLGTRAD GCSFEDPLVW  180
DGKPPAVSSD SSAKAPLCGD HSPHISFPAS QDYVNVVSRD DDENSSGCTH PNTTKRSFRP  240
APRIGDRRIR KILASKYWKV APKLKDATLS NTVLMVSDGD LKTVYHNRNS YYRSIRSERN  300
YPIKKRRLFN CSSVPNYDRK IRSEGICVSP ERCINGDVSA LCAKMHEVTG ASSSVAGSHT  360
SFQSRDSHVK LRIKSFRVPE LFIELPETAT VGSLKRRVME AVNAILGGGL RVGVLLQGKK  420
VKDDNKTLLQ TGISHDNQKD VLGFSLEPKT SRTPPPLCSG DSPFMLPSNA PQPLARYPPA  480
PGVVHQGTCD AVPELQMANA VNFIESDHDS APSPTDMSID KSTKDSKALV TVPAMSVEAL  540
AVVPVHRKSK RSEIVQRRIR RPFSVAEVEA LVQAVEKLGT GRWRDVKLRA FDNAKHRTYV  600
DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLTAHAYW TQQQAKQQFK QQPETCLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-575446501107Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424852.10.0telomere repeat-binding protein 5 isoform X3
RefseqXP_006488346.10.0telomere repeat-binding protein 5 isoform X3
TrEMBLV4SC390.0V4SC39_9ROSI; Uncharacterized protein
STRINGXP_006424852.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-132TRF-like 2