PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027955m
Common NameCICLE_v10027955mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 672aa    MW: 73943.4 Da    PI: 7.452
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027955mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.76.3e-114104471954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++++LAk++gLt +qV++WF N R +
  Ciclev10027955m 410 FEHflHPYPKDSDKQQLAKQTGLTRSQVSNWFINARVR 447
                      664459******************************88 PP
2BELL120.38.5e-39275346172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +rqelq+kkakL+++l+eV++rYkqy++q+q+v+s+Fe++ag gsak+Yt+lAl++iS++FrcLkdai+ qi
  Ciclev10027955m 275 QRQELQIKKAKLVNMLDEVEQRYKQYHHQMQVVVSAFEQAAGFGSAKSYTALALRTISKQFRCLKDAISAQI 346
                      69********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.6E-59197344IPR006563POX domain
PfamPF075261.9E-47203343IPR006563POX domain
PROSITE profilePS5007112.552388451IPR001356Homeobox domain
SMARTSM003891.4E-10391455IPR001356Homeobox domain
CDDcd000861.74E-12391452No hitNo description
SuperFamilySSF466892.61E-17392458IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-29394458IPR009057Homeodomain-like
PfamPF059206.0E-19408447IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MATYFHLNPS EIQAGDGGGM QTLYLMNPSY DYTTSLPNNT LLLNPVNLSH APPSNDHQQQ  60
QHPLVGIPLP HAASSSHDHQ DNIPGGGVHY DLWSSIDQNS SQNNQTHMAS LAAAAAASNS  120
TAPLGLLRPV ASVPNRQQGL SLSLSSQQVA AYNRPINNNN NSIEVDDLHK GRGLQQGQVT  180
ESSPSSVSVV TSSGINSSTQ SAILGSKYLK AAQELLDEVV KVESMIIKGS DHHHSAKAAQ  240
IKETMKMNRE SIDGDQELNG TGDSTKSSFE LTTAQRQELQ IKKAKLVNML DEVEQRYKQY  300
HHQMQVVVSA FEQAAGFGSA KSYTALALRT ISKQFRCLKD AISAQIKATS KKLGEDDCLG  360
AKAEGSRLRF IDHQIRQQRA LQHLGMQHHA WRPQRGLPER AVTILRAWLF EHFLHPYPKD  420
SDKQQLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYMEE LKEQDKNGSA ENISKTESKE  480
SPQLLEQIKS LQAKAEKSTT QISPTELSNS TMSTSPMGGN FRQQTGFNLI GPSDHHLEGF  540
VQRSQKKPRN AEMQNSRSSI NDPGGGFGMF SMGPEIGRFN PDNHHHHHQL AAPTFHGNNG  600
VSLTLGLPHC ENLSLSGSQH NLLSSGQNIE PDHFCGIETP QHNSHSGTAY ESIDIQSRKR  660
FAAQLLPDFV T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-17397455563Homeobox protein Meis2
3k2a_B2e-17397455563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424091.10.0BEL1-like homeodomain protein 1
TrEMBLV4SJV00.0V4SJV0_9ROSI; Uncharacterized protein
STRINGXP_006424091.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3330922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-114BEL1-like homeodomain 1