PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10027933m | ||||||||
Common Name | CICLE_v10027927mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 695aa MW: 76790.1 Da PI: 9.3723 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 595 | 644 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Ciclev10027933m 595 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 644 6789999*******************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 8.72E-7 | 398 | 472 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 9.09 | 404 | 472 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 14.733 | 590 | 649 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-7 | 594 | 647 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 595 | 645 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.02E-17 | 596 | 646 | No hit | No description |
SuperFamily | SSF46689 | 1.88E-15 | 596 | 677 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MVLQKRLDYG FNGYQVPYTP RATRSARKRC SFKKRAEDNQ MCAFDLLATV AGKLLLEKQC 60 TPSSSNTPSD EDQSAVAKEI EQKAMQDENK QLKVETCDQG SCDRGFFVSD LVSQAHDQKC 120 SLKPPSCQQA DAHPGFASVI TTSDCSEGFG DQKLVNGKPK NEMGTLASKV EVGPSGYMGY 180 GNCKVEAETN KFMKDESHKT AKVQLGTRAD GCSFEDPLVW DGKPPAVSSD SSAKAPLCGD 240 HSPHISFPAS QDYVNVVSRD DDENSSGCTH PNTTKRSFRP APRIGDRRIR KILASKYWKV 300 APKLKDATLS NTDGDLKTVY HNRNSYYRSI RSERNYPIKK RRLFNCSSVP NYDRKIRSEG 360 ICVSPERCIN GDVSALCAKM HEVTGASSSV AGSHTSFQSR DSHVKLRIKS FRVPELFIEL 420 PETATVGSLK RRVMEAVNAI LGGGLRVGVL LQGKKVKDDN KTLLQTGISH DNQKDVLGFS 480 LEPKTSRTPP PLCSGDSPFM LPSNAPQPLA RYPPAPGVVH QGTCDAVPEL QMANAVNFIE 540 SDHDSAPSPT DMSIDKSTKD SKALVTVPAM SVEALAVVPV HRKSKRSEIV QRRIRRPFSV 600 AEVEALVQAV EKLGTGRWRD VKLRAFDNAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV 660 PQELLDRVLT AHAYWTQQQA KQQFKQQPET CLLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 1e-57 | 579 | 685 | 1 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424854.1 | 0.0 | telomere repeat-binding protein 5 isoform X4 | ||||
Refseq | XP_006488347.1 | 0.0 | telomere repeat-binding protein 5 isoform X4 | ||||
Swissprot | Q6R0E3 | 0.0 | TRP5_ARATH; Telomere repeat-binding protein 5 | ||||
TrEMBL | V4UFJ3 | 0.0 | V4UFJ3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006424852.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-156 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10027933m |
Entrez Gene | 18035362 |