PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027928m
Common NameCICLE_v10027927mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 700aa    MW: 77319.8 Da    PI: 9.3723
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027928mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07600649147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Ciclev10027928m 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 649
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542368.99E-7403477IPR029071Ubiquitin-related domain
PROSITE profilePS500539.09409477IPR000626Ubiquitin domain
PROSITE profilePS5129414.733595654IPR017930Myb domain
SMARTSM007172.0E-7599652IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-10600650IPR009057Homeodomain-like
SuperFamilySSF466891.97E-15601682IPR009057Homeodomain-like
CDDcd116602.00E-17601651No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPYTP RATRSARKRC SFKKRAEDNQ MCAFDLLATV AGKLLLEKQC  60
TPSSSNTPSD EDQSAVAKEI EQKAMQDENK QLKVETCDQG SCDRGFFVSD LVSQAHDQKC  120
SLKPPSCQQA DAHPGFASVI TTSDCSEGFG DQKLVNGKPK NEMGTLASKV EVGPSGYMGY  180
GNCKVEAETN KFMKDESHKT AKVQLGTRAD GCSFEDPLVW DGKPPAVSSD SSAKAPLCGD  240
HSPHISFPAS QDYVNVVSRD DDENSSGCTH PNTTKRSFRP APRIGDRRIR KILASKYWKV  300
APKLKDATLS NTVLMVSDGD LKTVYHNRNS YYRSIRSERN YPIKKRRLFN CSSVPNYDRK  360
IRSEGICVSP ERCINGDVSA LCAKMHEVTG ASSSVAGSHT SFQSRDSHVK LRIKSFRVPE  420
LFIELPETAT VGSLKRRVME AVNAILGGGL RVGVLLQGKK VKDDNKTLLQ TGISHDNQKD  480
VLGFSLEPKT SRTPPPLCSG DSPFMLPSNA PQPLARYPPA PGVVHQGTCD AVPELQMANA  540
VNFIESDHDS APSPTDMSID KSTKDSKALV TVPAMSVEAL AVVPVHRKSK RSEIVQRRIR  600
RPFSVAEVEA LVQAVEKLGT GRWRDVKLRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR  660
RGEPVPQELL DRVLTAHAYW TQQQAKQQFK QQPETCLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-575846901107Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006424852.10.0telomere repeat-binding protein 5 isoform X3
RefseqXP_006488346.10.0telomere repeat-binding protein 5 isoform X3
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLV4SC390.0V4SC39_9ROSI; Uncharacterized protein
STRINGXP_006424852.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-154TRF-like 2