PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10027927m | ||||||||
Common Name | CICLE_v10027927mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 700aa MW: 77319.8 Da PI: 9.3723 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 600 | 649 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Ciclev10027927m 600 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 649 6789999*******************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 8.99E-7 | 403 | 477 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS50053 | 9.09 | 409 | 477 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 14.733 | 595 | 654 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-7 | 599 | 652 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 600 | 650 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-15 | 601 | 682 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.00E-17 | 601 | 651 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MVLQKRLDYG FNGYQVPYTP RATRSARKRC SFKKRAEDNQ MCAFDLLATV AGKLLLEKQC 60 TPSSSNTPSD EDQSAVAKEI EQKAMQDENK QLKVETCDQG SCDRGFFVSD LVSQAHDQKC 120 SLKPPSCQQA DAHPGFASVI TTSDCSEGFG DQKLVNGKPK NEMGTLASKV EVGPSGYMGY 180 GNCKVEAETN KFMKDESHKT AKVQLGTRAD GCSFEDPLVW DGKPPAVSSD SSAKAPLCGD 240 HSPHISFPAS QDYVNVVSRD DDENSSGCTH PNTTKRSFRP APRIGDRRIR KILASKYWKV 300 APKLKDATLS NTVLMVSDGD LKTVYHNRNS YYRSIRSERN YPIKKRRLFN CSSVPNYDRK 360 IRSEGICVSP ERCINGDVSA LCAKMHEVTG ASSSVAGSHT SFQSRDSHVK LRIKSFRVPE 420 LFIELPETAT VGSLKRRVME AVNAILGGGL RVGVLLQGKK VKDDNKTLLQ TGISHDNQKD 480 VLGFSLEPKT SRTPPPLCSG DSPFMLPSNA PQPLARYPPA PGVVHQGTCD AVPELQMANA 540 VNFIESDHDS APSPTDMSID KSTKDSKALV TVPAMSVEAL AVVPVHRKSK RSEIVQRRIR 600 RPFSVAEVEA LVQAVEKLGT GRWRDVKLRA FDNAKHRTYV DLKDKWKTLV HTARISPQQR 660 RGEPVPQELL DRVLTAHAYW TQQQAKQQFK QQPETCLLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 1e-57 | 584 | 690 | 1 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424852.1 | 0.0 | telomere repeat-binding protein 5 isoform X3 | ||||
Refseq | XP_006488346.1 | 0.0 | telomere repeat-binding protein 5 isoform X3 | ||||
Swissprot | Q6R0E3 | 0.0 | TRP5_ARATH; Telomere repeat-binding protein 5 | ||||
TrEMBL | V4SC39 | 0.0 | V4SC39_9ROSI; Uncharacterized protein | ||||
STRING | XP_006424852.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3240 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-154 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10027927m |
Entrez Gene | 18035362 |