PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027921m
Common NameCICLE_v10027883mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 706aa    MW: 76865 Da    PI: 6.1634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027921mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06281301526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd C +aHg
  Ciclev10027921m 281 PCPEFRK-GSCRQGDACEYAHG 301
                      8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.48E-1731164IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-1932180IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.75975174IPR020683Ankyrin repeat-containing domain
SMARTSM002480.03875105IPR002110Ankyrin repeat
PfamPF127961.4E-1075144IPR020683Ankyrin repeat-containing domain
CDDcd002048.61E-1677174No hitNo description
PROSITE profilePS5008813.117110145IPR002110Ankyrin repeat
SMARTSM002481.7E-5110142IPR002110Ankyrin repeat
SMARTSM003561.0E-4276302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662281303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4309339IPR000571Zinc finger, CCCH-type
SMARTSM0035617311334IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.202311335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MCSGLKRKPT QTGFIMDTDS QKQDGLCYNF SILLELTASD DLDGFRKAIE EDGHDIDESG  60
LWYGRIIGSR KMGFEERTPL MIASMFGSKD VVSYVIKSGH VDVNRACGSD GVTALHCAAS  120
GGSANSVEVV KLLLNASADV NSVDAYGNRP ADLIAKNCNL GFNSRKKVLQ ALLKGSGTGC  180
VEEIDNLCDQ VVYKMEEQEQ PEISTPRVLK DGAEKKEYPV DLTLPDIKNG IYGTDEFRMY  240
TFKVKPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPEFRKGSC RQGDACEYAH  300
GIFECWLHPA QYRTRLCKDE TNCNRRVCFF AHKPEELRPL YASTGSAVPS PRSFSANGSS  360
FDMLSISPLA LGSPSAMIPP TSTPPLTPSG ASSPMGGTMW NQPNIAPPTL QLPGSRLKSA  420
RNARDMDFDM ELLRLENRRR QQQLIDEISS LSSPSGWANS LSSAAPFSSS ADRTGDMNRI  480
GGVKPTNLDD IFGSLNPTLM PQLQGTSLDA SASQLQSPTG IQMRQNMNQQ LRSSYPASSS  540
PVRPSQSFGI DTSGATAAAV LSSRSAAFAK RSQSFIERNT VSRHSGFSSP DSTAAVMPSN  600
LADWGSPDGK LDWGVQREDL NKLRKSASFG IRSNGGSVAT SETSTPATAD EPDVSWVQSL  660
VRDSPSIRSG QFGFEEQQCH LNSGGSEMLP AWVEQLYMEQ EQLVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024034674.10.0zinc finger CCCH domain-containing protein 66 isoform X2
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLV4SHM30.0V4SHM3_9ROSI; Uncharacterized protein
STRINGXP_006425080.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein