PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027883m
Common NameCICLE_v10027883mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 742aa    MW: 81058.1 Da    PI: 6.3068
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027883mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06317337526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd C +aHg
  Ciclev10027883m 317 PCPEFRK-GSCRQGDACEYAHG 337
                      8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.23E-1765200IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-1968216IPR020683Ankyrin repeat-containing domain
PfamPF127961.5E-10111180IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.759111210IPR020683Ankyrin repeat-containing domain
SMARTSM002480.038111141IPR002110Ankyrin repeat
CDDcd002049.41E-16113210No hitNo description
PROSITE profilePS5008813.117146181IPR002110Ankyrin repeat
SMARTSM002481.7E-5146178IPR002110Ankyrin repeat
SMARTSM003561.0E-4312338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662317339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4345375IPR000571Zinc finger, CCCH-type
SMARTSM0035617347370IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.202347371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MFLILVVVIA FVNMVSVIIL QRGETFNWRS EKKEISMCSG LKRKPTQTGF IMDTDSQKQD  60
GLCYNFSILL ELTASDDLDG FRKAIEEDGH DIDESGLWYG RIIGSRKMGF EERTPLMIAS  120
MFGSKDVVSY VIKSGHVDVN RACGSDGVTA LHCAASGGSA NSVEVVKLLL NASADVNSVD  180
AYGNRPADLI AKNCNLGFNS RKKVLQALLK GSGTGCVEEI DNLCDQVVYK MEEQEQPEIS  240
TPRVLKDGAE KKEYPVDLTL PDIKNGIYGT DEFRMYTFKV KPCSRAYSHD WTECPFVHPG  300
ENARRRDPRK YHYSCVPCPE FRKGSCRQGD ACEYAHGIFE CWLHPAQYRT RLCKDETNCN  360
RRVCFFAHKP EELRPLYAST GSAVPSPRSF SANGSSFDML SISPLALGSP SAMIPPTSTP  420
PLTPSGASSP MGGTMWNQPN IAPPTLQLPG SRLKSARNAR DMDFDMELLR LENRRRQQQL  480
IDEISSLSSP SGWANSLSSA APFSSSADRT GDMNRIGGVK PTNLDDIFGS LNPTLMPQLQ  540
GTSLDASASQ LQSPTGIQMR QNMNQQLRSS YPASSSPVRP SQSFGIDTSG ATAAAVLSSR  600
SAAFAKRSQS FIERNTVSRH SGFSSPDSTA AVMPSNLADW GSPDGKLDWG VQREDLNKLR  660
KSASFGIRSN GGSVATSETS TPATADEPDV SWVQSLVRDS PSIRSGQFGF EEQQCHLNSG  720
GSEMLPAWVE QLYMEQEQLV A*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024034674.10.0zinc finger CCCH domain-containing protein 66 isoform X2
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLV4SHM30.0V4SHM3_9ROSI; Uncharacterized protein
STRINGXP_006425080.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein