PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10027619m

Common Name

CICLE_v10027619mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 667aa MW: 77069.1 Da PI: 8.3081

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10027619m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.6	3.6e-22	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH+l Ciclev10027619m 60 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHNHTL 143 69***************************************9988.....99*******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-19	60	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-29	261	355	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.681	548	584	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.6E-4	558	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MEEAPLSSEQ VPDGECSESQ KEGEGETVVF DGQNGVIEGK KEFVAPAVGM EFESYDDAYN 60 YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI 120 RMRLVDSKRW RVLEVTLEHN HTLGAKVYRS IKKMGTGTKK KSLSSSDADG RTIKLYRALV 180 IDAGGNGNLN AIEREVRNSN CPNQLNLKKG DSQAIYNYFC RMQLTNPNFF YLMDLNDEGH 240 LRNVFWIDGR SRASCVYFTD VIYIDNTYLL SRFEIPLVAF VGINHHGQSV LLGCGLLAGE 300 TTESYKWLFK AWLSCASGRC PQTIITDRCK VLQSAIVEVF PKARHRFGVS HVMKKVPEKL 360 GGLRNYDAIR KALFKAVYES LKVIEFEAAW GFMVQRFGVV DHEWLRSLYE DRAQWAPVYL 420 KDTYFAGMCA AQPGDTLNPF FDRYVHKQTP LKEFLDKYEL ALQKKHKEEN LADIESRSVS 480 PTLKTRCSFE LQLSRIYTRE IFKKFQLEVE EMYSCFSTTQ LHVDGPIVIF LVKERVLGEG 540 NRREIRDFEV LYNRTAGEVR CICSCFNFYG YLCRHALCVL NFNGVEEIPS KYILSRWKKD 600 YKRLYIPDHV CNNVDATDRV QWFNQLYRSA LQVVEEGVIY LDHYKAALQT FEESLNRVHD 660 VEEKQE*

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MEEAPLSSEQ VPDGECSESQ KEGEGETVVF DGQNGVIEGK KEFVAPAVGM EFESYDDAYN  60
YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI  120
RMRLVDSKRW RVLEVTLEHN HTLGAKVYRS IKKMGTGTKK KSLSSSDADG RTIKLYRALV  180
IDAGGNGNLN AIEREVRNSN CPNQLNLKKG DSQAIYNYFC RMQLTNPNFF YLMDLNDEGH  240
LRNVFWIDGR SRASCVYFTD VIYIDNTYLL SRFEIPLVAF VGINHHGQSV LLGCGLLAGE  300
TTESYKWLFK AWLSCASGRC PQTIITDRCK VLQSAIVEVF PKARHRFGVS HVMKKVPEKL  360
GGLRNYDAIR KALFKAVYES LKVIEFEAAW GFMVQRFGVV DHEWLRSLYE DRAQWAPVYL  420
KDTYFAGMCA AQPGDTLNPF FDRYVHKQTP LKEFLDKYEL ALQKKHKEEN LADIESRSVS  480
PTLKTRCSFE LQLSRIYTRE IFKKFQLEVE EMYSCFSTTQ LHVDGPIVIF LVKERVLGEG  540
NRREIRDFEV LYNRTAGEVR CICSCFNFYG YLCRHALCVL NFNGVEEIPS KYILSRWKKD  600
YKRLYIPDHV CNNVDATDRV QWFNQLYRSA LQVVEEGVIY LDHYKAALQT FEESLNRVHD  660
VEEKQE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006427391.1	0.0	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_024036782.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	V4SU14	0.0	V4SU14_9ROSI; Uncharacterized protein
STRING	XP_006427391.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Ciclev10027619m
Entrez Gene	18035746

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]