PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10027194m
Common NameCICLE_v10027194mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 193aa    MW: 22081.1 Da    PI: 9.678
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10027194mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41.1e-102373148
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT eEde+l+  + +   +   +W+ ++r  g+ R++k+c +rw+++l
  Ciclev10027194m 23 RGFWTGEEDERLKSFILLNDEEggwNWEDVPRGAGLLRCGKSCHDRWFNHL 73
                     799*****************99*************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8481877IPR017930Myb domain
SMARTSM007171.9E-52275IPR001005SANT/Myb domain
SuperFamilySSF466897.27E-1722118IPR009057Homeodomain-like
CDDcd001678.63E-42673No hitNo description
PfamPF139216.9E-82689No hitNo description
Gene3DG3DSA:1.10.10.605.6E-162680IPR009057Homeodomain-like
PROSITE profilePS500906.78374118IPR017877Myb-like domain
SMARTSM007176.6E-478125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-1381120IPR009057Homeodomain-like
CDDcd001673.96E-482121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
YSEHIKEKMC PSCVSKDHHM IRRGFWTGEE DERLKSFILL NDEEGGWNWE DVPRGAGLLR  60
CGKSCHDRWF NHLNPNIRRG DFTLEEDELI INLCRAGSKW TNIGLLLPGR THKDVMNYCK  120
TSYMRYKMSN RGVDPFANKR PRRKSSTASS SASASKKKNI IQEESTSKIP KNQLDGEKSG  180
KLDLHLSLKT PN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-152112825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139143RPRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425416.21e-136transcription factor MYB32
TrEMBLV4SNM31e-141V4SNM3_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006425416.11e-141(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3327022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-32myb domain protein 4