PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10027138m

Common Name

CICLE_v10027138mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GATA

Protein Properties

Length: 379aa MW: 42341.3 Da PI: 7.7344

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10027138m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.8	1.1e-16	303	337	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l Ciclev10027138m 303 CLHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 337 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	11.174	297	333	IPR000679	Zinc finger, GATA-type
SMART	SM00401	4.6E-16	297	347	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.6E-13	301	335	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	4.56E-14	301	361	No hit	No description
CDD	cd00202	3.34E-13	302	349	No hit	No description
PROSITE pattern	PS00344	0	303	328	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.5E-14	303	337	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MGQSKDPRNF LKKFILYFLS FSFYPNRTNF ITQLKFLQNF AIFTLQTFQT SHILSQNRSI 60 SRQFSLLTNS DTFLMETPEF YIGGYFNAAS TNNFSSEKRV VVAADQKPGE NFNFTVEDLL 120 DFSNDDAIMN DGGFFENVAA NSTDSSTVTS NSAVSGGENN FPANFSGCRS SNSFADSQFC 180 GELCVPYDDL AELEWLSNFV EDSFSMDQTL QKSDLEFLSG SKSLTPESSS SSTRLEPVSP 240 KASNPVFLPE TPLPGKARSK RPRAAPCDWS TRLLHVSPKG PSVERESPNP LMHTESGDSV 300 RKCLHCASEK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV SAKHSNSHRK 360 VMELRRQKEM QRAPQQQFL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MGQSKDPRNF LKKFILYFLS FSFYPNRTNF ITQLKFLQNF AIFTLQTFQT SHILSQNRSI  60
SRQFSLLTNS DTFLMETPEF YIGGYFNAAS TNNFSSEKRV VVAADQKPGE NFNFTVEDLL  120
DFSNDDAIMN DGGFFENVAA NSTDSSTVTS NSAVSGGENN FPANFSGCRS SNSFADSQFC  180
GELCVPYDDL AELEWLSNFV EDSFSMDQTL QKSDLEFLSG SKSLTPESSS SSTRLEPVSP  240
KASNPVFLPE TPLPGKARSK RPRAAPCDWS TRLLHVSPKG PSVERESPNP LMHTESGDSV  300
RKCLHCASEK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE YRPAASPTFV SAKHSNSHRK  360
VMELRRQKEM QRAPQQQFL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024036448.1	0.0	GATA transcription factor 12
Swissprot	P69781	4e-69	GAT12_ARATH; GATA transcription factor 12
TrEMBL	V4RYP3	0.0	V4RYP3_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006426898.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5682	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	2e-63	GATA transcription factor 12

Link Out ? help Back to Top
Phytozome	Ciclev10027138m
Entrez Gene	18036055

Publications ? help Back to Top
Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]