PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026245m
Common NameCICLE_v10026245mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 279aa    MW: 30713 Da    PI: 10.4064
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026245mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.5e-14556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I r  +     + R+  ++k++w+++
  Ciclev10026245m  5 KQKWTAEEEEALLAGVAKHGPGKWKNILRDPQfapslTQRSNIDLKDKWRNL 56
                     79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.703161IPR017930Myb domain
SMARTSM007174.5E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-15460IPR009057Homeodomain-like
PfamPF002497.1E-10556IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-14664IPR009057Homeodomain-like
CDDcd116602.33E-20656No hitNo description
SMARTSM005264.7E-20114179IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.62E-16114195IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150426.507116184IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.6E-15116186IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005384.2E-12118177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILRDPQFAPS LTQRSNIDLK DKWRNLSVSN  60
AQQGSKDKIR GPKLKTTVVA PLSNTPNSAP AASLTRNVSS GAVMNDTSTS ALDGKNGPKY  120
NAMIFEAIST LKDANGSDIS AIANFIEERQ EAPPNFRRLL SSRLRRLVSQ GKLEKVRNCY  180
KIRKETSIGV KTPTPKQKDA RLRPPRNSAL MTSREIVEEA SITAAYRIAE AENKSFLAAE  240
AFKEAERVSK MAEDTDAMLQ LVKEIYERCS RGEIVLLA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426592.10.0telomere repeat-binding factor 4 isoform X1
SwissprotF4I7L11e-91TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A067FG810.0A0A067FG81_CITSI; Uncharacterized protein
TrEMBLA0A2H5NEJ90.0A0A2H5NEJ9_CITUN; Uncharacterized protein
TrEMBLV4SGW10.0V4SGW1_9ROSI; Uncharacterized protein
STRINGXP_006426592.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.16e-87MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]