PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026234m
Common NameCICLE_v10026234mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 281aa    MW: 30970.3 Da    PI: 9.3634
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026234mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002397119123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  Ciclev10026234m  97 FSCNYCQRKFYSSQALGGHQNAH 119
                      89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-693124No hitNo description
PROSITE profilePS5015711.42797124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEPPKSEPSE TSSFISVSNA AHSCIIKPSE KEGQKVQRQN TNPALVLDLS LSNKDSNRGS  60
KPELNLIDCF KSTDSSQDSL ENNDIHRQGN ETEPRVFSCN YCQRKFYSSQ ALGGHQNAHK  120
RERTLAKRGQ RISTPSSSSS SLAFGHHHNP NSYTHRSYPS LASLPLHGSF NRSLGIQVHS  180
MIHKPSFIPS TINSSYSYSQ NGWPRQPIDQ QPAIGKLSQE NFQANAAAGS SSINGVSKFE  240
NVKKFSPVTE GNIGGYWCDF VSPFKTKQDD LQKLDLSLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006427588.10.0zinc finger protein 1
TrEMBLV4S0F00.0V4S0F0_9ROSI; Uncharacterized protein
STRINGXP_006427588.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-42zinc-finger protein 1