PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10026137m
Common NameCICLE_v10026137mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 310aa    MW: 35164.6 Da    PI: 10.1902
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10026137mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-1520107196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv     +++s++l +p  fa++ + + + +k ++++d  gr+W+ k+  +   g +v++++W++F+  + L+ gDf+vFk++g+s f   v
  Ciclev10026137m  20 FFKVY--LPAFSSKQLAIPPAFAKHLN-V-TVPKHVIIRDYAGRQWRGKM--EEVEGVIVIKDCWERFACVHSLELGDFLVFKYNGSSLF--DV 105
                      77877..7899999*********5444.3.46678***************..9**99***************************997777..55 PP

                      EE CS
               B3  95 kv 96 
                      k+
  Ciclev10026137m 106 KI 107
                      54 PP
2B356.74.4e-182213041699
                      EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE-S CS
               B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfrk 99 
                      + ++ + +++hg+k   + +++l+d++gr+W vk+++r + gr+v+t+GW++F ++++L++gD +vF+  l++  +++e++v+v+rk
  Ciclev10026137m 221 VNVSVRVVRSHGIK--LEPEMMLRDQNGRKWPVKISFRTN-GRIVITGGWSDFWREQKLEAGDKCVFEfvLTRGnMSKEMKVQVVRK 304
                      56677889999866..4449***************98777.589************************76555559*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-2013113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1915113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.11118111IPR003340B3 DNA binding domain
SMARTSM010199.3E-1320111IPR003340B3 DNA binding domain
CDDcd100171.46E-1320108No hitNo description
PfamPF023623.1E-1320103IPR003340B3 DNA binding domain
CDDcd100173.54E-13200303No hitNo description
SuperFamilySSF1019362.94E-20204303IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-22204304IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.76206305IPR003340B3 DNA binding domain
SMARTSM010193.4E-15209305IPR003340B3 DNA binding domain
PfamPF023629.4E-16222304IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVRPARRKSS PSDKSTDSEF FKVYLPAFSS KQLAIPPAFA KHLNVTVPKH VIIRDYAGRQ  60
WRGKMEEVEG VIVIKDCWER FACVHSLELG DFLVFKYNGS SLFDVKIYGI NGCLKEGTNT  120
THHKKETPIA DMNAIPVKKE IGREAEQTSI MDDPSCNQDD LEIMLISSGK RGGSSVASRV  180
KTRLRDEKDT GEDRAFKAAR LVVPKNPHFV SVFSQYSRYA VNVSVRVVRS HGIKLEPEMM  240
LRDQNGRKWP VKISFRTNGR IVITGGWSDF WREQKLEAGD KCVFEFVLTR GNMSKEMKVQ  300
VVRKMKTCL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425800.10.0putative B3 domain-containing protein At5g66980
RefseqXP_006466673.10.0putative B3 domain-containing protein At5g66980
TrEMBLV4SJL30.0V4SJL3_9ROSI; Uncharacterized protein
STRINGXP_006466673.10.0(Citrus sinensis)
STRINGXP_006425800.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-41B3 family protein