PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10025985m
Common NameCICLE_v10025985mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 349aa    MW: 39164.9 Da    PI: 8.8663
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10025985mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.3e-1643103156
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 
                      s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +e Aa+a++ a++k++g+
  Ciclev10025985m  43 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDNEEAAARAYDLAALKYWGH 103
                      57*******************999955656446*************************997 PP
2AP253.17.8e-17145196155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a+++a+ +++g
  Ciclev10025985m 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAQAYDRAAIEYRG 196
                      89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-1343103IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1743112IPR016177DNA-binding domain
PROSITE profilePS5103220.57444110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1644111IPR001471AP2/ERF domain
SMARTSM003807.7E-2844116IPR001471AP2/ERF domain
PRINTSPR003673.5E-64556IPR001471AP2/ERF domain
PfamPF008471.1E-12145196IPR001471AP2/ERF domain
CDDcd000183.48E-25145206No hitNo description
SuperFamilySSF541711.11E-17145206IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-18146205IPR001471AP2/ERF domain
SMARTSM003805.7E-26146210IPR001471AP2/ERF domain
PROSITE profilePS5103218.373146204IPR001471AP2/ERF domain
PRINTSPR003673.5E-6186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAKTSRQSQK NTTTNPNNNN TVTTKTKRTR KSVPRDSPPQ RSSIYRGVTR HRWTGRYEAH  60
LWDKNCWNES QNKKGRQVYL GAYDNEEAAA RAYDLAALKY WGHDTILNFP LSNYEEELVE  120
MEGQSKEEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAAQAYDRA AIEYRGLNAV TNFDLSKYIK WLRPNNNQNN PKPSNPQQNP NSDDTSPIPK  240
LNQETSSGSD TSAPPPRSGA TAGGSGSASS ALGLLLQSSK YKEMVEKTST DCLSTSSEPG  300
SSHRIFPDDI QTMFFDCQDS SSYTEGDDVL LGDLNPYIFP TFYSELDN*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006427681.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN41e-120AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLV4SUT20.0V4SUT2_9ROSI; Uncharacterized protein
STRINGXP_006427681.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-109AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]