PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10025925m | ||||||||
Common Name | CICLE_v10025925mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 364aa MW: 40160 Da PI: 9.5893 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99 | 2.9e-31 | 292 | 349 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ Ciclev10025925m 292 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHS 349 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.9E-15 | 240 | 288 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.8E-32 | 279 | 349 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.458 | 285 | 351 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.68E-27 | 288 | 349 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-38 | 290 | 350 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.2E-27 | 292 | 348 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MAVELMMEYG NTSHFTDKVE DCAVQEAASG LESVEKLINL LSQQQQVQQN NSHQSSPSSR 60 SSMDLENDCK AVADVAVSKF KRVISLLGRN RIGHARFRRA PVAAPCVDYQ QNQEKDKNLQ 120 QRQQQEVEVV PETKVYYARP IQQIPPLPPP PRNYHQHEFS TLVVPKNGVD LERKDSATTI 180 NFSNYTSAGN SFLSSLTVTG DNDNKQQPSS SSASATFHFT NLSQQVSSAG KPPLSSSSLK 240 RKCSSASDNL ASAKSCGVSS GRCHCTKKRK SRVKRVVRVP AVSLRLSDIP PDDFSWRKYG 300 QKPIKGSPHP RGYYKCSSVR GCPARKHVER ALDDPSMLVV TYEGEHNHSL SVADTRNLIL 360 ESS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-21 | 288 | 350 | 15 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 7e-21 | 288 | 350 | 15 | 76 | Probable WRKY transcription factor 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.5027 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425967.1 | 0.0 | probable WRKY transcription factor 15 | ||||
Swissprot | Q9STX0 | 1e-90 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A067GUV3 | 0.0 | A0A067GUV3_CITSI; Uncharacterized protein | ||||
TrEMBL | V4SF70 | 0.0 | V4SF70_9ROSI; Uncharacterized protein | ||||
STRING | XP_006425967.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1715 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 5e-67 | WRKY DNA-binding protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10025925m |
Entrez Gene | 18035710 |