PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10025376m
Common NameCICLE_v10025376mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 517aa    MW: 57404.3 Da    PI: 7.7722
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10025376mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.8e-17144234199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f k +++s+v +  ++ lp  f+++h  +  +++ ++ledesg +++ k+  +k++    l++GW++F  a++L egD++vF+l+     +l+v
  Ciclev10025376m 144 FAKSMVRSHVASCFWMGLPGYFCKSHLPD--KDTSVVLEDESGIQYTAKYFAEKTG----LSAGWRQFSTAHNLVEGDVLVFQLIA--PLKLKV 229
                      889***********************544..4567***************555555....***********************997..777899 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                       ++r+
  Ciclev10025376m 230 YIIRA 234
                      98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-20136235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-22137235IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-24142233No hitNo description
SMARTSM010195.3E-18144235IPR003340B3 DNA binding domain
PfamPF023625.0E-15144234IPR003340B3 DNA binding domain
PROSITE profilePS5086312.576144235IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MDLELEVKKE VVDEHVNTTS HRSEAARPTD DEEATIAQLS LLPASSKPKR KRKPKTIFSA  60
DEPMKPSKKK GKIILKLKKS PPDTSVTSVP GTVEPDSRGG GKTKSSKKNK DVVDGKCSPV  120
EPKSPAMIRA EEVQSNLEPQ FPSFAKSMVR SHVASCFWMG LPGYFCKSHL PDKDTSVVLE  180
DESGIQYTAK YFAEKTGLSA GWRQFSTAHN LVEGDVLVFQ LIAPLKLKVY IIRANDFTEV  240
DGALGLLNLD APSKQNDTAE LEIDNGEPIV VTNQNTKKKR KKSLPLAVVQ KKNKKSVQGR  300
SASNLGQPAE QSENDSEEVG SEVLEGFKIS TPPVQFKDVT SLDNFNILVD GLVVDSELPE  360
DIRCNYYKLC CSQNAFLHEN LAQGINFKLI VGTISEIVNI ADALRACKFT TSRDEFAMWD  420
KTLKAFELLG MSVGFLRARL RRLQRLAFES EGAEDTRRYI EAKAQQSQTQ DEIRNIEARL  480
VELKGAWQRF DAEISSLKSS AESYELKFRE VANAPW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753PKRKRKP
2277281KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.89450.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425870.10.0B3 domain-containing protein Os01g0234100
RefseqXP_006466621.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLV4SJT60.0V4SJT6_9ROSI; Uncharacterized protein
STRINGXP_006466621.10.0(Citrus sinensis)
STRINGXP_006425870.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM168371012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-35B3 family protein