PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10025157m

Common Name

CICLE_v10025157mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 629aa MW: 72816.3 Da PI: 7.5517

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10025157m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.4	3e-15	58	131	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn YAke GF r ++ + ++ Cs ++++++ + r+r+etr gC a++k +++++++w+++++eleHnH l+p Ciclev10025157m 58 FYNCYAKEQGFGSREKY-----------RGKLSCSSASFKKKSEAN-----RPRPETRAGCPAMIKFRLMETKRWRIIEVELEHNHLLSP 131 9********988764...........45789***999888.....*********************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-11	58	131	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.9E-23	224	316	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.186	510	546	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.3E-4	521	548	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MDEVSLNTEP IGDDDTDDFE VVGDCAMTEY VGQTGIIQNP LPPAVGMEFE MYDDVYYFYN 60 CYAKEQGFGS REKYRGKLSC SSASFKKKSE ANRPRPETRA GCPAMIKFRL METKRWRIIE 120 VELEHNHLLS PRSGKFCKSH KHIGIGTKRT LHLDSAEEVQ KIKLSNQLKL KPGDAQAVQS 180 FFCRLQLTDP NFFNVVDLNE KGCLRNLFWT DTRSRVAYRY FGDVVLIDTT CLIERYDVPL 240 VSFIGVNHYG QSVLLGCGLL ASETIESYTW LFRAWLTCML GRSPQTIITD QCRILQIAVG 300 DVFPRAYRCF SLSCIMQKIP VKLQGLFEYE AIKAALHRAI YHSLRPEKFE AAWKDMIQRH 360 GIKDHGWIQT LYEDRKRWAP IYLKEAFLSG VFSFPQNEVS TSYFEGYLDK NTPLKEFLDK 420 YDQALRANYQ LEALADMDSR NSSCIQKPRC YYEFQLSKLY TNEMLRKFQT EVEAMYSCYS 480 TKHVSADGPI TYIVKEEFEV GSNEKDSRAF DVLYNASNLE VLCVCGLFNF RGYLCRHILC 540 VLNQSGVQEI PSQYILSRWR KDVKRSYFLN HSCSGVDIKN PVHRYDDLYK RIVQVVEEGR 600 QSQDRYKVTL QALDKILNKL HLVEDHQV*

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MDEVSLNTEP IGDDDTDDFE VVGDCAMTEY VGQTGIIQNP LPPAVGMEFE MYDDVYYFYN  60
CYAKEQGFGS REKYRGKLSC SSASFKKKSE ANRPRPETRA GCPAMIKFRL METKRWRIIE  120
VELEHNHLLS PRSGKFCKSH KHIGIGTKRT LHLDSAEEVQ KIKLSNQLKL KPGDAQAVQS  180
FFCRLQLTDP NFFNVVDLNE KGCLRNLFWT DTRSRVAYRY FGDVVLIDTT CLIERYDVPL  240
VSFIGVNHYG QSVLLGCGLL ASETIESYTW LFRAWLTCML GRSPQTIITD QCRILQIAVG  300
DVFPRAYRCF SLSCIMQKIP VKLQGLFEYE AIKAALHRAI YHSLRPEKFE AAWKDMIQRH  360
GIKDHGWIQT LYEDRKRWAP IYLKEAFLSG VFSFPQNEVS TSYFEGYLDK NTPLKEFLDK  420
YDQALRANYQ LEALADMDSR NSSCIQKPRC YYEFQLSKLY TNEMLRKFQT EVEAMYSCYS  480
TKHVSADGPI TYIVKEEFEV GSNEKDSRAF DVLYNASNLE VLCVCGLFNF RGYLCRHILC  540
VLNQSGVQEI PSQYILSRWR KDVKRSYFLN HSCSGVDIKN PVHRYDDLYK RIVQVVEEGR  600
QSQDRYKVTL QALDKILNKL HLVEDHQV*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024035972.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Refseq	XP_024035973.1	0.0	protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	V4UMH1	0.0	V4UMH1_9ROSI; Uncharacterized protein
STRING	XP_006427379.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Ciclev10025157m
Entrez Gene	18036220

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]