PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10024419m
Common NameCICLE_v10024419mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 437aa    MW: 47490 Da    PI: 7.6287
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10024419mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-06132152526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++++  G C +Gd C+F H+
  Ciclev10024419m 132 VCCHWLL-GNCVRGDECRFLHS 152
                      6******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7562955IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-43054IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.742127154IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4128153IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5129152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4132152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.1E-35158431IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.9E-6158197IPR001680WD40 repeat
SuperFamilySSF509786.77E-36159206IPR017986WD40-repeat-containing domain
PfamPF004002.8E-5162197IPR001680WD40 repeat
PROSITE profilePS5029413.633165206IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.92165206IPR001680WD40 repeat
PROSITE patternPS006780184198IPR019775WD40 repeat, conserved site
SMARTSM003202.6237274IPR001680WD40 repeat
SuperFamilySSF509786.77E-36244431IPR017986WD40-repeat-containing domain
PfamPF004000.0035285342IPR001680WD40 repeat
SMARTSM003200.03306343IPR001680WD40 repeat
SMARTSM0032064347390IPR001680WD40 repeat
SMARTSM0032086393430IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
IQQTHNQRER SFFTPINGRA GGRVGGGRPT SKVVCVYFLE GRCNRNPCRF AHTESSSLLL  60
SNPKLAKKSP PSYNRLKNNL WVSSGSEDRI PHVRNRENPG YTGPKNSSSA SSTVSDESGD  120
KSTSKKTTLK NVCCHWLLGN CVRGDECRFL HSWFCGEGLT MLAKLEGHEK AVSGIALPLR  180
SDKLLSGSRD GTVRLWDCNT GQCASVINLG AGVGSLICEG PWVFTGMPNV VKAWNIESLA  240
EFSLDGPVGE VYSMVVANEM LFAGAQDGNI LVWKGSPNTQ NPFQLATSLR GHTRPVTCLA  300
VWELDTLEPV MTLNDHTNAP MSLLCWDQFL LSCSLDHTIK VWFATGGGNV EAAYTHKEDH  360
GVLALAGLND PDGKPVLIGA CNDNTVHLYE LPSFMERGRI FSKHEVRVIE IGPDNLFFTG  420
DGAGMLGVWK LLAKPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-181414318324Tako8
6g6n_A3e-181414318324Tako8
6g6n_B3e-181414318324Tako8
6g6n_C3e-181414318324Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026GGRVGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478717.10.0zinc finger CCCH domain-containing protein 48-like, partial
SwissprotQ9FNZ21e-135C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLV4VSZ20.0V4VSZ2_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006443009.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-135zinc finger WD40 repeat protein 1