PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10024035m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 396aa MW: 44649.3 Da PI: 6.7544 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.7 | 3.9e-52 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek...ewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPt+eel+++yL+kkv+++k++l +vi++vd++k+ePwd+++k+k +++ +wyfFs++dkky+tg+r+nrat++g+Wkatg+dk Ciclev10024035m 11 VPPGFRFHPTEEELLHYYLRKKVSSEKIDL-DVIRDVDLNKLEPWDIQEKCKIGSTpqsDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKV 103 69****************************.9***************9655543333359********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s + + +g++ktLvfykgrap+g+k+dW+mheyrl Ciclev10024035m 104 IHS-NCRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 *99.8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-58 | 7 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.902 | 11 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-28 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MSISVNGQSQ VPPGFRFHPT EEELLHYYLR KKVSSEKIDL DVIRDVDLNK LEPWDIQEKC 60 KIGSTPQSDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKVIHSNCRR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD DNPNEITNVS NVMGDATQEE SWVVCRIFKK KDHHKTLGSP 180 TSSSINGNRM FNSCNEGSLE QILQHMGGTC KEESDEPNNN LRLYRAILGT GTGGFDHNDP 240 FLKLPSLRSP NSSGSQNNYH HYPMPMVTEI EGSVSNQVSS SNLNNSVYHT ETESSSGLTS 300 WAALDRLVAS QLNGQTETSR QLACFNEPTM APYCNPTDDD HQHDFQLPPL RSSSILSSNS 360 SYHGSEDYNN EIDIWNYTRS SSSSDPLCHA SNNRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 8 | 171 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 8 | 171 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 8 | 171 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 8 | 171 | 14 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 8 | 171 | 17 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 8 | 171 | 17 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 8 | 171 | 17 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 8 | 171 | 17 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 8 | 171 | 17 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 8 | 171 | 17 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 8 | 171 | 17 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 8 | 171 | 17 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-48 | 8 | 171 | 14 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 8 | 171 | 14 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in various aboveground tissues undergoing thickening of the lignified secondary wall such as anthers, filaments of stamens, the base of carpels, styles, the boundaries between siliques and pedicels, the midrib of leaf veins, and inflorescence stems, specifically in interfascicular fibers (sclerenchyma), cells differentiating into vascular vessels, and xylary fibers (secondary xylem). {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444738.2 | 0.0 | NAC domain-containing protein 43 | ||||
Refseq | XP_006491359.1 | 0.0 | NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-139 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A067HF32 | 0.0 | A0A067HF32_CITSI; Uncharacterized protein | ||||
STRING | XP_006491359.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-122 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10024035m |