PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023422m
Common NameCICLE_v10023422mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 290aa    MW: 32314.3 Da    PI: 6.2635
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023422mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.51.1e-101462349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49
                      + k +r v+fskRr+g+l KA E +  +  + a+++ s+  + ++y++
  Ciclev10023422m 14 RDTKEQRAVSFSKRRHGLLNKAAEYCLRTRSQLALLVSSPvsDTTFYTF 62
                     567899********************************96336778887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.815464IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-9465IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-14583IPR002100Transcription factor, MADS-box
CDDcd002669.72E-15586No hitNo description
PRINTSPR004044.9E-5626IPR002100Transcription factor, MADS-box
PfamPF003191.9E-91762IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-52641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MVAVGKRRIP LKRRDTKEQR AVSFSKRRHG LLNKAAEYCL RTRSQLALLV SSPVSDTTFY  60
TFGHSSVDAV LDAFVNNRAP EAADKDLVRL GISMFNEVKD LELYDKKISK AIKSDGNLER  120
EGFWEDYEKL GNSDESIGEL GVIVDKLAKA KEKAILRLTD LLASPQVSNS GSRNASASNV  180
GCASDEQFKF GNNYACGERF KFGNNHIHED DNKKEFIKFG TGYVEKEVMT GLELEEYCDA  240
KQGYFGNFLT LGADANIAHQ NCLVYQPDPI AIANEFGQHL PYDVNFFNI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLV4TQ540.0V4TQ54_9ROSI; Uncharacterized protein
STRINGXP_006442322.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17339310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38620.11e-17M-type_MADS family protein