PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10023420m
Common NameCICLE_v10023420mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 568aa    MW: 61282.2 Da    PI: 8.3709
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10023420mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-056587123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  Ciclev10023420m 65 FVCEICNKGFQRDQNLQLHRRGH 87
                     89*******************88 PP
2zf-C2H215.45.3e-05141163123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H++t+
  Ciclev10023420m 141 WKCDKCSKKYAVQSDWKAHQKTC 163
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.31E-86487No hitNo description
Gene3DG3DSA:3.30.160.601.9E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496587IPR007087Zinc finger, C2H2
SMARTSM003550.0176587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355100106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-5129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.31E-8136162No hitNo description
SMARTSM0035594141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MSNITGDEGS FSSGNTGEEV QQRIREKQQQ NLLNHVHGSS ASGPSDPNAE VVALSPTTLM  60
ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTTTE VRKRVYICPE PSCVHHNPAR  120
ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVQSDWKAHQ KTCGTREYKC DCGTIFSRRD  180
SFITHRAFCD ALAEENNKVN QGLMDNLGQN MQSQMPELMS SMPLNTGGNN TSLGMSEFNN  240
FDPKNPMKSL PQDLVPMPFK SVNMGGGGGG GGGGMFSSSS GTLFGGPRSI SSSSSSLQLS  300
SNSSSGFNYL QDSKNGCLIS GTAHMSATAL LQKAAQMGAT ASSGINSPMM QKSFTNSMAG  360
PDQQLSSTNK TPAYGSIQKQ HNASYDQQHF PSQAAHEQQS NMMMQKATQD MSQLFDQHTG  420
AASTGGMNND MGIMFTGMYM SSGGGDHQGA AGLGFTKNME NEDSSGSSSL IQAGRNAMER  480
NSTTGPSRFG GSNVTGGGGG GGDMMTLDFM GIGGTRPANL HEQQQQRMEL EAMSHHQRVP  540
MMTPFHQQQL PHSHGDSVLE KPTLWDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-33137200366Zinc finger protein JACKDAW
5b3h_F3e-33137200366Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480107.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-105IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLV4VW000.0V4VW00_9ROSI; Uncharacterized protein
STRINGXP_006444264.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15443818
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.13e-93C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]