PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10023255m | ||||||||
Common Name | CICLE_v10023255mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 257aa MW: 28818.2 Da PI: 6.3032 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.5 | 3.1e-13 | 69 | 108 | 6 | 47 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++E++l+++++++lG++ W++Ia +++ gRt++ +k++w++ Ciclev10023255m 69 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNGIKNYWNTC 108 89***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-7 | 18 | 48 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.86E-20 | 24 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9 | 26 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-6 | 50 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.483 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-11 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-12 | 69 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.11E-9 | 69 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-18 | 73 | 110 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MRNPSSSSSS DGTKKITPCC SKVGIKKGPW TPEEDEILSN YIKREGEGYC RLRWMNYLRP 60 SIKRGHIAPD EEDLILRLHR LLGNRWSLIA GRIPGRTDNG IKNYWNTCLR KKLISQGIDP 120 TTHKPLIFNQ VVLHDQLASS SSTSNPNTPS LEIMEEAGVR STHQAAAANF TTNYNIPIDG 180 GFMMGSLLPS SHGHGYNCIE DYIDNCDADT FSSFLDSLVN DDDFMNHINE QQQQSSTSSY 240 NNIGTIDWEF ADVLSKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-20 | 27 | 113 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024043308.1 | 1e-167 | LOW QUALITY PROTEIN: transcription repressor MYB5 | ||||
Swissprot | Q38850 | 4e-65 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | V4TY93 | 0.0 | V4TY93_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006443445.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 1e-65 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10023255m |
Entrez Gene | 18047333 |
Publications ? help Back to Top | |||
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