PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10022291m | ||||||||
Common Name | CICLE_v10022291mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22238.1 Da PI: 6.885 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.8 | 5.9e-41 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+k+Cv+apyf a+q + +fa+vhk+FGasn +kll+++p+++r da+ sl+yeA ar+rdP+yG+vg+i +lqqq+ +l+ae Ciclev10022291m 9 PCGACKFLRRKCVKGCVFAPYFDADQgTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQVVNLQAE 102 7*************************88****************************************************************** PP DUF260 94 lallkee 100 la ++++ Ciclev10022291m 103 LAFTQAR 109 **99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.943 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.2E-40 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSANNGGGPC GACKFLRRKC VKGCVFAPYF DADQGTTHFA AVHKVFGASN ASKLLSRIPP 60 HKRLDAVVSL CYEAMARTRD PIYGCVGHIV ALQQQVVNLQ AELAFTQARL SILQRLPMAS 120 AAQDQSTSPC SLYSSSEMVS TADMASGYNI SMQFDPLQQQ QTSTDQTSSF NPFDQEIDDG 180 DLQALAREFV SKYLPGVKLQ PSNSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-40 | 5 | 103 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-40 | 5 | 103 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445238.2 | 1e-152 | LOB domain-containing protein 19 isoform X1 | ||||
Refseq | XP_006490937.1 | 1e-152 | LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 2e-69 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A2H5NPB4 | 1e-150 | A0A2H5NPB4_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TDR1 | 1e-150 | V4TDR1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006490937.1 | 1e-151 | (Citrus sinensis) | ||||
STRING | XP_006445238.1 | 1e-151 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 7e-58 | LOB domain-containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10022291m |
Entrez Gene | 18049063 |