PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10022033m | ||||||||
Common Name | CICLE_v10022033mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GRF | ||||||||
Protein Properties | Length: 233aa MW: 25398.8 Da PI: 10.2947 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.3 | 3.7e-25 | 126 | 170 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr rsrk +e+ Ciclev10022033m 126 DPEPGRCRRTDGKKWRCSKEAIPDHKYCERHVHRGRLRSRKLVEA 170 79****************************************997 PP | |||||||
2 | QLQ | 39.8 | 1.3e-14 | 57 | 91 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l++Ky+ a++PvP++L+ +i+k Ciclev10022033m 57 FTIFQLQELQLQSLIFKYMEARLPVPSQLVIPIWK 91 7778*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.5E-5 | 55 | 91 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.952 | 56 | 91 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 9.5E-10 | 57 | 90 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.796 | 126 | 170 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.4E-21 | 127 | 169 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MKPQNPPTKL ARLADFGTGR ANWSRSCSME SSKGDGSPSI ALELELGTGC SKRSYGFTIF 60 QLQELQLQSL IFKYMEARLP VPSQLVIPIW KSVASSVSGL SGDLHQLYPS FYGSGSLHLE 120 LKNGMDPEPG RCRRTDGKKW RCSKEAIPDH KYCERHVHRG RLRSRKLVEA SRRSPSTSSA 180 ITNANTNLSI SLPAVNNSST AIATASNPSP NFGFSPRSVL YDGGNKKLEP SL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440462.1 | 1e-171 | growth-regulating factor 10 | ||||
TrEMBL | V4TJZ7 | 1e-170 | V4TJZ7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006440462.1 | 1e-171 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16724 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-38 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10022033m |
Entrez Gene | 18047922 |