PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021911m
Common NameCICLE_v10021911mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27757.6 Da    PI: 9.3356
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021911mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.28.1e-32958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  Ciclev10021911m  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                     79**********************************************95 PP
2K-box1033.9e-34811701099
            K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       e++++s++qe++kLk+++e+Lqr+qRhllGedL++Ls+keLq+Le+qLe +l   R++K+++++eq+e+l+kke++l ++nk+Lr kle
  Ciclev10021911m  81 IERETQSWYQEATKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALALARQRKTQIMIEQVEDLRKKERQLGDINKQLRIKLE 170
                      46789*********************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.571161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-41160IPR002100Transcription factor, MADS-box
CDDcd002658.18E-45272No hitNo description
SuperFamilySSF554551.12E-33283IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.9E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-3082169IPR002487Transcription factor, K-box
PROSITE profilePS5129716.82885175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009911Biological Processpositive regulation of flower development
GO:0010094Biological Processspecification of carpel identity
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048455Biological Processstamen formation
GO:0048459Biological Processfloral whorl structural organization
GO:0048509Biological Processregulation of meristem development
GO:0048833Biological Processspecification of floral organ number
GO:0080060Biological Processintegument development
GO:0080112Biological Processseed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSA  60
GINKTLERYQ RCCFNPQDNS IERETQSWYQ EATKLKAKYE SLQRTQRHLL GEDLGPLSVK  120
ELQNLEKQLE GALALARQRK TQIMIEQVED LRKKERQLGD INKQLRIKLE TEGQSFKAIQ  180
DLWNSAAAGA GNSNFSVHPS HDSPMNCDPE PALQIGYLNY LPSEGSSVPK NTVGETNFIQ  240
GWVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-238716919101Developmental protein SEPALLATA 3
4ox0_B4e-238716919101Developmental protein SEPALLATA 3
4ox0_C4e-238716919101Developmental protein SEPALLATA 3
4ox0_D4e-238716919101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00315DAPTransfer from AT2G45650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4098701e-149FJ409870.1 Gossypium hirsutum MADS-13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445200.10.0agamous-like MADS-box protein AGL6 isoform X1
RefseqXP_006490967.10.0agamous-like MADS-box protein AGL6 isoform X1
SwissprotQ8LLR11e-150MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A067HDD81e-180A0A067HDD8_CITSI; Uncharacterized protein
TrEMBLA0A2H5NPE71e-180A0A2H5NPE7_CITUN; Uncharacterized protein
TrEMBLV4U2Z71e-180V4U2Z7_9ROSI; Uncharacterized protein
STRINGXP_006490967.10.0(Citrus sinensis)
STRINGXP_006445200.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-118AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]