PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021535m
Common NameCICLE_v10021501mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 284aa    MW: 31492.2 Da    PI: 8.2273
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021535mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.6e-18126180256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Ciclev10021535m 126 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 180
                      788899***********************************************98 PP
2HD-ZIP_I/II125.52.4e-40126214190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk+rlskeq+ lLEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +
  Ciclev10021535m 126 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-S 214
                      69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.3E-35197IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.6E-18104180IPR009057Homeodomain-like
SuperFamilySSF466899.41E-19113183IPR009057Homeodomain-like
PROSITE profilePS5007117.281122182IPR001356Homeobox domain
SMARTSM003896.2E-15124186IPR001356Homeobox domain
CDDcd000863.41E-15126183No hitNo description
PfamPF000462.8E-15126180IPR001356Homeobox domain
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
SMARTSM003401.1E-25182225IPR003106Leucine zipper, homeobox-associated
PfamPF021834.3E-11182215IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGEKDDGLGL SLSLGCAARN EPSLRLNHMP LSSSQSMQNH HKRSPWTELF HSSDTRSFLR  60
GIDVNQAPTV ADCEEENGVS SPNSTVSSIS GKRSEREPIG DETEAERASC SRGSDDEDGG  120
AGDASRKKLR LSKEQSLLLE ETFKEHSTLN PKQKLALAKQ LNLRPRQVEV WFQNRRARTK  180
LKQTEVDCEY LKRCCENLTE ENRRLQKEVQ ELRSLKLSPQ LYMNMNPPTT LTMCPSCERV  240
AVSSSSSSSS AAANGTTRLP IGPNHQRLTP VSPWAALPIH HRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130SRKKLRL
2174182RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024955133.10.0homeobox-leucine zipper protein ATHB-4 isoform X2
SwissprotP466021e-108HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLV4U3L90.0V4U3L9_9ROSI; Uncharacterized protein
STRINGXP_006464444.10.0(Citrus sinensis)
STRINGXP_006445396.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-79homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]