PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021165m
Common NameCICLE_v10021165mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 324aa    MW: 36589.8 Da    PI: 7.2592
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021165mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12185210126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ +tG+C yGd+CkF+H+
  Ciclev10021165m 185 YQPDICKDYKETGYCGYGDSCKFMHD 210
                      67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-9182215IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7184211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878184212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12185215IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10185210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.5E-13257303IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.6E-8261302No hitNo description
SuperFamilySSF578501.93E-12261304No hitNo description
PROSITE profilePS5008910.468262300IPR001841Zinc finger, RING-type
SMARTSM001845.2E-4262299IPR001841Zinc finger, RING-type
CDDcd001628.62E-8262303No hitNo description
PROSITE patternPS005180277286IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAESGSGEAQ QAEQVCNFFR KPTKNKNIRK RTIREDEDED SIESSVLQNL KKPTKPDSKL  60
YFSTGPSKRD TSADSNADSE KPIFQFESSK EIQVQHDSKA TATLETETDF LRDSRALREK  120
VLKRSEEALK GKASGDEKLY KGIHGYVDHK AGFRREHTVS SEKAGGSHGP LRASAHIRVT  180
ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQM EKEWEEAEKA RKRNLALGGG  240
DSDEEGVGQS DDDDEDSLPF ACFICRKPFV DPVVTKCKHY FCEHCALKHH SKNKKCFVCN  300
EPTLGIFNTA LEIRKRMAEE GKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-6197317113317RING finger protein 113A
5z58_M6e-6197317113317RING finger protein 113A
6ff4_t6e-6197317113317RING finger protein 113A
6ff7_t6e-6197317113317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439792.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_006476759.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-170C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A067G2P30.0A0A067G2P3_CITSI; Uncharacterized protein
TrEMBLA0A2H5NFD50.0A0A2H5NFD5_CITUN; Uncharacterized protein
TrEMBLV4TI410.0V4TI41_9ROSI; Uncharacterized protein
STRINGXP_006476759.10.0(Citrus sinensis)
STRINGXP_006439792.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-156C3H family protein