PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020744m
Common NameCICLE_v10020744mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 365aa    MW: 41127.8 Da    PI: 5.0565
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020744mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.5e-29127188159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK++ g +fpr+YYrCt++   gC ++k+v+rs++dp+++e+tY+g+H+++
  Ciclev10020744m 127 LDDGYCWRKYGQKDILGRNFPRGYYRCTHRharGCLATKQVQRSDDDPSMFEVTYRGRHKCS 188
                      59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-28117189IPR003657WRKY domain
PROSITE profilePS5081123.629122185IPR003657WRKY domain
SuperFamilySSF1182901.83E-25126189IPR003657WRKY domain
SMARTSM007746.7E-40127189IPR003657WRKY domain
PfamPF031061.9E-26128187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MKRSTMDRDQ NILITELAQG KELAKRLRNH LNPSSSPETR EFLVQEILSS YEKALSMLNY  60
SHSLQSNKLD ITMVESPRSF PNTATSPRSD ASDQDYCKDV VSKKRKTMPQ WTEQVKVTSG  120
TALEGTLDDG YCWRKYGQKD ILGRNFPRGY YRCTHRHARG CLATKQVQRS DDDPSMFEVT  180
YRGRHKCSQN SHLALASTSS TKQVSIDQKN PCCNQQKESE EKPKEANGVM LNFGAELRVK  240
SEDLDAAESI FSPFSFPHES IGQENINVED NLFLDGMIDN NFMGGFSPTF ISPATSESNY  300
FSMSPCRMTN FGLGYDVQTP ESDLKAEIIS TPTSVINSPF GDFDFSLTKE DLDPNFQFDD  360
LDCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-191271851474Disease resistance protein RRS1
5w3x_D4e-191271851474Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.201251e-176fruit| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444876.10.0probable WRKY transcription factor 46
TrEMBLV4U7F50.0V4U7F5_9ROSI; Uncharacterized protein
STRINGXP_006444876.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-49WRKY DNA-binding protein 46