PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020336m
Common NameCICLE_v10020307mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 418aa    MW: 46727 Da    PI: 4.4877
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020336mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd++l ++++  G g+W++ ++  g+ R++k+c++rw +yl
  Ciclev10020336m 14 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding56.66.1e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE+e+++++++ lG++ W++Ia+ m+ gRt++++k++w+++l
  Ciclev10020336m  67 RGNITAEEEEIIIKLHASLGNR-WSLIASNMP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.57961IPR017930Myb domain
SuperFamilySSF466895.35E-2811108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002498.5E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-211568IPR009057Homeodomain-like
CDDcd001675.29E-81661No hitNo description
PROSITE profilePS5129426.6862116IPR017930Myb domain
SMARTSM007171.8E-1766114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2569116IPR009057Homeodomain-like
CDDcd001674.91E-780112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDDILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TAEEEEIIIK LHASLGNRWS LIASNMPGRT DNEIKNYWNS HLSRKIHTFW  120
RPSSEKTLPV KVDVAAAGTG VASDRKAGKK IGSAIMKNKS HSKKDGNINI GTEEIVAKDG  180
NINIGTEEIV ASIEEDIPLP ATPTLEKETL PSTALVGCMD LDSFAEDKET TDKIVRSPCR  240
QEDNGLDSSE VREKSVLCSG EETRINNKSM LCRTGEEKET EILEPFEGID DAKLCFNDLL  300
DPNEVWTLME EKDTRVTNTF EGRQIGNNVP TSEELVSANG DSVSLRSCSS VNSFFDDSNF  360
DWDWENVIQD YDPQRDENEN VLSWLWESGD KDEPKSHEGE DETDCEKQNA MVAWLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444460.20.0transcription factor MYB11 isoform X1
TrEMBLV4U1190.0V4U119_9ROSI; Uncharacterized protein
STRINGXP_006480050.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.16e-74myb domain protein 12