PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019977m
Common NameCICLE_v10019977mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 477aa    MW: 52955.9 Da    PI: 8.2912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019977mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023390412123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C k+F++   L  H r+H
  Ciclev10019977m 390 HECPICRKVFPSGQALGGHKRSH 412
                      79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.8E-5632No hitNo description
PROSITE profilePS501579.307931IPR007087Zinc finger, C2H2
PfamPF139122.0E-6932IPR007087Zinc finger, C2H2
SMARTSM003550.15931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723303330IPR007087Zinc finger, C2H2
SuperFamilySSF576672.88E-7303325No hitNo description
PfamPF139122.0E-10303327IPR007087Zinc finger, C2H2
SMARTSM003550.65303325IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280305325IPR007087Zinc finger, C2H2
SuperFamilySSF576672.88E-7385412No hitNo description
PROSITE profilePS501579.307390412IPR007087Zinc finger, C2H2
PfamPF139123.1E-12390412IPR007087Zinc finger, C2H2
SMARTSM003550.02390412IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MEEDREFKHV CKFCSKSFPC GRSLGGHMRS HMITITETTD GHHKQLAKKK LPSVNNTETN  60
GYGLRENPKK SKRIADSSED NTSQQQQQLC GKGFVSWKPM KCNSEKDRVS NNNTSLEDQD  120
SLTSANQKLV TDSQSDNETA APNRKRRSKR RTRYMATPTA NSCSISVANN KNNGSSSVSE  180
IEQEQEEVAM CLMMLSRDVG SRGVLNSVAE SSDNNSVFLE PKIEAKKLKE KKLDSEKAKV  240
IKNLKKETEL DQAELGSSKQ NSTSKKNVCN SFDPELRSDS FKRSTTDASD AEFYKDSQKR  300
SKFECATCNK IFHSYQALGG HRASHKKIKG CFATKIDSSE NSIEAEHSPD PTADSKLIKS  360
INNENSADHF FVADCDDHRA ETSCGAKKKH ECPICRKVFP SGQALGGHKR SHLLGGNEAR  420
NSPAIVLENP IPEIRNFLDL NLPAPDEEDS NAHLGLQQWW ISSSHKHEAL VSLISN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440700.10.0zinc finger protein ZAT4
TrEMBLV4TQE80.0V4TQE8_9ROSI; Uncharacterized protein
STRINGXP_006440700.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16472912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.14e-43C2H2-like zinc finger protein