PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10019401m
Common NameCICLE_v10019219mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 597aa    MW: 66779.4 Da    PI: 4.8421
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10019401mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.5e-054114441755
                      HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      N++f  Lr+++P  +       ++Ka+iL  +++Y+k+L+
  Ciclev10019401m 411 NEKFMVLRSMVPYiS------EVDKASILSDTIKYLKKLE 444
                      99***********66......8***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-3513136IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.064394443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-6402448No hitNo description
SMARTSM003534.6E-6404449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-9409460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-8411453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MQAMELTPDK IGLQRSKQLR ELYESLLKGE SELAYKRPSA ALSPEDLTDA EWYYLVCMSF  60
VFSSGQGLPG RALANSETIW LCNAQCADSK VFSRSLLAKS ASIQTVICFP HLDGVIELGV  120
TELVPEDPSL LQHIKASLLD FSKPFCSEKS SSPPYDEDDD SDPLCAKVSH EILDTVALES  180
LYSPGEENKF DGEGVYELHG NINEELHLDS ADECSKGCEH NHQTEESFMV DGINGAASQV  240
QSWHFVDDDL SNGIPDSMHS SDHKSESLVN QAEGFPSSKD ENMSHIQLKE LQEGNHTKLS  300
LLDLGIVDGA HYRKTLSAIF GSSNRLTENP CFLSVEHKSS FVSWKKGGMV KRHWPGIQQN  360
LLKKILFSVP LMHGGCTHRS QKEICRKYCP VTMESDNFCE EHISSDKRTE NEKFMVLRSM  420
VPYISEVDKA SILSDTIKYL KKLEARVEEL ESCMYSVDSE PRPKRNYTEM VEQTSDNYDN  480
KKLDNHKKPW INKRKACDID ETDPELNKFV PKDGLADVKV SIQEMDVLIE MRCPSREYIL  540
LDIMDAINNL HLDAYSVVSS NLDGVLTLAL KSTFRGAAIA PAGIIEQALW KIAGKC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6458110.0EF645811.1 Citrus sinensis cultivar Valencia MYC2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445042.10.0transcription factor EGL1 isoform X1
RefseqXP_006491098.10.0transcription factor EGL1
TrEMBLA0A067H5G20.0A0A067H5G2_CITSI; Uncharacterized protein
TrEMBLV4TXI70.0V4TXI7_9ROSI; Uncharacterized protein
STRINGXP_006491098.10.0(Citrus sinensis)
STRINGXP_006445042.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-122bHLH family protein