PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10018266m | ||||||||
Common Name | CICLE_v10018266mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 155aa MW: 18052.5 Da PI: 4.6115 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.1 | 2.2e-16 | 80 | 150 | 2 | 72 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 +Y++YA+++GF vr+++ +++ ng+it rt+vCs+eg+r + + +++er+ r+ trt+C+a++ + +++ Ciclev10018266m 80 YYRQYARKAGFGVRRHNIRRN-VNGNITGRTWVCSREGFRPAKYLQkKSREREARPLTRTSCQAQFCIILNS 150 8**************999998.8999*************98876553688999***********99887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-14 | 80 | 150 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MNNSNEEQED RDDLEYPVTI EADIYGQWNV SSNDEGEAHN DDFGSIELQT DINNEMGTNQ 60 TEIDQQQCRE FESEEQAETY YRQYARKAGF GVRRHNIRRN VNGNITGRTW VCSREGFRPA 120 KYLQKKSRER EARPLTRTSC QAQFCIILNS ETNR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015387794.1 | 5e-79 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024041910.1 | 5e-79 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | V4TF85 | 1e-110 | V4TF85_9ROSI; Uncharacterized protein | ||||
STRING | XP_006445808.1 | 1e-111 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16776 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-10 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10018266m |
Entrez Gene | 18051915 |