PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10018239m | ||||||||
Common Name | CICLE_v10018239mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 133aa MW: 15209.5 Da PI: 10.2421 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.6 | 5.9e-25 | 20 | 105 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYneYAk+vGFsvr+++skks ++gei+++++ Cskeg +++e + ++r+r + r gCkakl + k+k+g+++ + +e++HnH+l+ Ciclev10018239m 20 EFYNEYAKKVGFSVRINSSKKS-HTGEIVRKEYICSKEGATTKEVVE---KKRRRGKVREGCKAKLAMVKSKSGTYVASVFEEDHNHPLT 105 6*****************9999.8999**************999766...8999999*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-22 | 20 | 105 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MNDIGIDTGE KFVLLDDVHE FYNEYAKKVG FSVRINSSKK SHTGEIVRKE YICSKEGATT 60 KEVVEKKRRR GKVREGCKAK LAMVKSKSGT YVASVFEEDH NHPLTTPRRF SIMILHLMSG 120 SRLKSNLEFN LKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015389930.1 | 9e-61 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | V4UBQ9 | 7e-93 | V4UBQ9_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006448360.1 | 1e-93 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-12 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10018239m |
Entrez Gene | 18051106 |