PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10018084m

Common Name

CICLE_v10018084mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 860aa MW: 97338.9 Da PI: 6.691

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10018084m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.2	2.1e-16	64	138	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGFs ++ + ++ + ++ i+ r+fvC +eg ++++ ++ C+a+l+++++ ++kw+vtk+++eH+H+++ Ciclev10018084m 64 FYDEYARRVGFSSKVCHFSRPRPDEPIVFREFVCGREGLKRRHGES--------------CDAMLRIELKGQNKWVVTKFVKEHSHPMV 138 9************************************9998877..............************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-13	64	138	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-25	307	399	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.868	585	621	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.1E-10	593	619	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	596	623	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 860 aa Download sequence Send to blast
MDVDVVEVEG GMGQRGVSDD GEIEPNESAE ANNAENSSAH GDDDGIMDPY VGMEFHTEDA 60 AKTFYDEYAR RVGFSSKVCH FSRPRPDEPI VFREFVCGRE GLKRRHGESC DAMLRIELKG 120 QNKWVVTKFV KEHSHPMVSP SKVHYLRPRR HFAGTTKAEV YQGVGIVPSG IMYVSMDGNR 180 ATVETNNRGA RTATPVETRT APPIESRTAP PVESRTAPPI ESRTAPPIES NRAVKNTGAL 240 NYVVRPANRR RTLGRDAQNL LDYFKKMQAE NPGFFYAIQL DDDNRMANVF WADARSRTAY 300 SHFGDAVTLD TRYRVYQYNV PFAPFTGINH HGQMILFGCA LLLDDSEASF VWLFKTFLTA 360 MNDCQPVSIT TDQDKAIQIA VAKVFPEVRH CISKWHVLRE GQEKLAHVCL AHPNFQVELY 420 NCINLTETIE EFELSWNSIL DKYDLRGHDW LQSLYNARSQ WVPVYFRDSF FAAISPNQGF 480 DGSFFDGYVN QQTTIPMFFR QYERALENSF EREIEADFDT ICTTPRLRTP SPMERQAANS 540 FTRKVFTKFQ EELVETFVYT ANGIESDGAI STFRVAKFED DSRAYIVTFN HPEMRANCSC 600 QMFEYSGILC RHVLTVFTVT NVLTLPSHYI LKRWTRNAKT GIGVDERTAE LHGQESLTMR 660 YNNLCREAIK YSEDGAIAQE TYNVAMSSIR EGWKKVAVVK KNVAKVPPPG SHVSGTGYDD 720 RKISASPSDS TPLLWPRQDE MTRRFNLNDS GPAIQPVSDL NLPRMAPVSL HRDDGPSDNM 780 VVLPCLKSMT WVMENKNSAP GNRVAVINLK LHDYSKTPSA ELEVKFQLSK VTLEPMLRSM 840 AYISDQLSTP ANRVAVINLK

Sequence ? help Back to Top

Protein Sequence Length: 860 aa Download sequence Send to blast

MDVDVVEVEG GMGQRGVSDD GEIEPNESAE ANNAENSSAH GDDDGIMDPY VGMEFHTEDA  60
AKTFYDEYAR RVGFSSKVCH FSRPRPDEPI VFREFVCGRE GLKRRHGESC DAMLRIELKG  120
QNKWVVTKFV KEHSHPMVSP SKVHYLRPRR HFAGTTKAEV YQGVGIVPSG IMYVSMDGNR  180
ATVETNNRGA RTATPVETRT APPIESRTAP PVESRTAPPI ESRTAPPIES NRAVKNTGAL  240
NYVVRPANRR RTLGRDAQNL LDYFKKMQAE NPGFFYAIQL DDDNRMANVF WADARSRTAY  300
SHFGDAVTLD TRYRVYQYNV PFAPFTGINH HGQMILFGCA LLLDDSEASF VWLFKTFLTA  360
MNDCQPVSIT TDQDKAIQIA VAKVFPEVRH CISKWHVLRE GQEKLAHVCL AHPNFQVELY  420
NCINLTETIE EFELSWNSIL DKYDLRGHDW LQSLYNARSQ WVPVYFRDSF FAAISPNQGF  480
DGSFFDGYVN QQTTIPMFFR QYERALENSF EREIEADFDT ICTTPRLRTP SPMERQAANS  540
FTRKVFTKFQ EELVETFVYT ANGIESDGAI STFRVAKFED DSRAYIVTFN HPEMRANCSC  600
QMFEYSGILC RHVLTVFTVT NVLTLPSHYI LKRWTRNAKT GIGVDERTAE LHGQESLTMR  660
YNNLCREAIK YSEDGAIAQE TYNVAMSSIR EGWKKVAVVK KNVAKVPPPG SHVSGTGYDD  720
RKISASPSDS TPLLWPRQDE MTRRFNLNDS GPAIQPVSDL NLPRMAPVSL HRDDGPSDNM  780
VVLPCLKSMT WVMENKNSAP GNRVAVINLK LHDYSKTPSA ELEVKFQLSK VTLEPMLRSM  840
AYISDQLSTP ANRVAVINLK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024046144.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Refseq	XP_024046145.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	V4TGW0	0.0	V4TGW0_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006446368.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Ciclev10018084m
Entrez Gene	18051130

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]