PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10018064m
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 293aa    MW: 33227.2 Da    PI: 6.3631
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10018064mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.3e-121461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     +g+W +eEd +l+ +++++G   Wk+   +m+    + R++k+c++rw +yl
  Ciclev10018064m 14 KGSWAPEEDRKLIAYIRRYG--IWKL--DEMPkyagLLRCGKSCRLRWMNYL 61
                     799*****************..6888..88887888**************97 PP
2Myb_DNA-binding62.58.3e-2067110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eEde ++++++qlG++ W++Ia++++ gRt++++k++w++
  Ciclev10018064m  67 RGNFTQEEDETIIKLHEQLGNR-WSAIASRLP-GRTDNEIKNHWHS 110
                      89********************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.124961IPR017930Myb domain
SuperFamilySSF466891.55E-2611108IPR009057Homeodomain-like
SMARTSM007176.4E-81363IPR001005SANT/Myb domain
PfamPF002493.9E-101461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-191568IPR009057Homeodomain-like
CDDcd001676.73E-71661No hitNo description
PROSITE profilePS5129428.11962116IPR017930Myb domain
SMARTSM007171.9E-1766114IPR001005SANT/Myb domain
PfamPF002491.7E-1767110IPR001005SANT/Myb domain
CDDcd001676.24E-1369112No hitNo description
Gene3DG3DSA:1.10.10.602.6E-2769115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MVKAGGSEKP SLRKGSWAPE EDRKLIAYIR RYGIWKLDEM PKYAGLLRCG KSCRLRWMNY  60
LRPDIRRGNF TQEEDETIIK LHEQLGNRWS AIASRLPGRT DNEIKNHWHS RLSKKRLTKN  120
NQQQVPSVTK SLQETQTAAI FEFDEANKQN KNPPEILIAD PIPIIPNNSR EPPKVLTGCT  180
SPSPQLSADN CSSSTSYVSA NYEEIYKIQS SKVSNYDHPS ENLDGLHNFW EQPFTVDTLC  240
MTMAEGYGQE ATYTDPGFVV SSPLWGYQQD YQFPSASSAS SCDADDDLWV CF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-281011523127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024951267.10.0transcription factor MYB14-like
TrEMBLA0A2H5N2690.0A0A2H5N269_CITUN; Uncharacterized protein
TrEMBLV4U8X60.0V4U8X6_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006467925.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-53myb domain protein 14