PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10017764m
Common NameCICLE_v10017764mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 266aa    MW: 30674.4 Da    PI: 6.4175
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10017764mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding408.9e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l   +   G ++W+ +++  g+ R++k+c++rw +yl
  Ciclev10017764m 14 RGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding55.21.6e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E++++++++ +lG++ W++Ia++++ gRt++++k+ w++
  Ciclev10017764m  67 RGAFTEDEEDQIIQLHSLLGNR-WSKIAAHLP-GRTDNEIKNQWNT 110
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.414961IPR017930Myb domain
SuperFamilySSF466892.86E-2811108IPR009057Homeodomain-like
SMARTSM007171.1E-51363IPR001005SANT/Myb domain
PfamPF002498.7E-111461IPR001005SANT/Myb domain
CDDcd001674.05E-41661No hitNo description
PROSITE profilePS5129426.1962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2665116IPR009057Homeodomain-like
SMARTSM007174.5E-1766114IPR001005SANT/Myb domain
PfamPF002492.3E-1667110IPR001005SANT/Myb domain
CDDcd001671.92E-1169110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMSFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGAF TEDEEDQIIQ LHSLLGNRWS KIAAHLPGRT DNEIKNQWNT RIKKRLKLLG  120
LDPVTHKPIN GNHEEQVVTV DKKTDDQHEI KHSKLNVTSS STEQEIDDNV MEEIRRTDDD  180
VKTQQVLNID YQLLWGNNLN NVVASGSCSA SSFSWEKSNN YNPSSLSNDQ SNSFQQWIDN  240
VNVDSLLSWD YCFNQQEDNL FLHLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. Strongest expression in the stem. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447177.10.0myb-related protein 315
RefseqXP_024950783.10.0myb-related protein 315-like
SwissprotP813943e-78MYB15_ANTMA; Myb-related protein 315
TrEMBLV4U3C80.0V4U3C8_9ROSI; Uncharacterized protein
STRINGXP_006470116.10.0(Citrus sinensis)
STRINGXP_006447177.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.15e-84myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]